Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8876 to 8900 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
6638838
6638850
ACAGCC
12
+
2
CACAGC
ENSGALT00000082280.2
6571226
6677011
-
Intron
38161
chr1
6639277
6639291
AAATT
14
+
2
AAATT
ENSGALT00000082280.2
6571226
6677011
-
Intron
37720
chr1
6639469
6639538
AAGGG
69
+
13
AGGGA
ENSGALT00000082280.2
6571226
6677011
-
Intron
37473
chr1
6639530
6639544
AAGGGG
14
+
2
GGGAAG
ENSGALT00000082280.2
6571226
6677011
-
Intron
37467
chr1
6639536
6639613
AAGGG
77
+
15
GGGAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
37398
chr1
6639611
6639675
AAGGG
64
+
12
GGAAG
ENSGALT00000082280.2
6571226
6677011
-
Intron
37336
chr1
6639846
6639858
AATAG
12
+
2
AGAAT
ENSGALT00000082280.2
6571226
6677011
-
Intron
37153
chr1
6640471
6640484
A
13
-
13
T
ENSGALT00000082280.2
6571226
6677011
-
Intron
36527
chr1
6640689
6640701
AAATC
12
+
2
CAAAT
ENSGALT00000082280.2
6571226
6677011
-
Intron
36310
chr1
6641097
6641109
AAGAG
12
+
2
GAAGA
ENSGALT00000082280.2
6571226
6677011
-
Intron
35902
chr1
6642867
6642881
AGGGG
14
-
2
CCTCC
ENSGALT00000082280.2
6571226
6677011
-
Intron
34130
chr1
6643517
6643530
AAAAAG
13
-
2
TTTTCT
ENSGALT00000082280.2
6571226
6677011
-
Intron
33481
chr1
6645220
6645232
AAGCAC
12
-
2
TGCTTG
ENSGALT00000082280.2
6571226
6677011
-
Intron
31779
chr1
6646339
6646352
AAGCTC
13
+
2
AGCTCA
ENSGALT00000082280.2
6571226
6677011
-
Intron
30659
chr1
6646429
6646443
AAGAG
14
-
2
CTCTT
ENSGALT00000082280.2
6571226
6677011
-
Intron
30568
chr1
6646918
6646931
AAAGCT
13
+
2
AAAGCT
ENSGALT00000082280.2
6571226
6677011
-
Intron
30080
chr1
6647018
6647031
AAAAGT
13
-
2
TTACTT
ENSGALT00000082280.2
6571226
6677011
-
Intron
29980
chr1
6647431
6647452
A
21
+
21
A
ENSGALT00000082280.2
6571226
6677011
-
Intron
29559
chr1
6647797
6647809
AACT
12
+
3
CTAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
29202
chr1
6648686
6648698
AAAT
12
+
3
AAAT
ENSGALT00000082280.2
6571226
6677011
-
Intron
28313
chr1
6650298
6650312
A
14
+
14
A
ENSGALT00000082280.2
6571226
6677011
-
Intron
26699
chr1
6650449
6650464
AAAT
15
-
3
TTTA
ENSGALT00000082280.2
6571226
6677011
-
Intron
26547
chr1
6651147
6651159
AGCTGC
12
+
2
GCAGCT
ENSGALT00000082280.2
6571226
6677011
-
Intron
25852
chr1
6651392
6651404
AAGATC
12
-
2
CTTGAT
ENSGALT00000082280.2
6571226
6677011
-
Intron
25607
chr1
6651800
6651812
AAATAC
12
-
2
TTGTAT
ENSGALT00000082280.2
6571226
6677011
-
Intron
25199