Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8826 to 8850 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
6585709
6585722
A
13
-
13
T
ENSGALT00000082280.2
6571226
6677011
-
Intron
91289
chr1
6588152
6588164
ACAGC
12
+
2
CAGCA
ENSGALT00000082280.2
6571226
6677011
-
Intron
88847
chr1
6590943
6590956
ACATAT
13
+
2
ATATAC
ENSGALT00000082280.2
6571226
6677011
-
Intron
86055
chr1
6591460
6591472
AATG
12
-
3
TCAT
ENSGALT00000082280.2
6571226
6677011
-
Intron
85539
chr1
6593308
6593327
AAAG
19
+
4
AAAG
ENSGALT00000082280.2
6571226
6677011
-
Intron
83684
chr1
6593320
6593333
AAAAAG
13
+
2
AAAGAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
83678
chr1
6594045
6594058
ACGAGC
13
+
2
CACGAG
ENSGALT00000082280.2
6571226
6677011
-
Intron
82953
chr1
6594343
6594355
AAAGCC
12
+
2
CAAAGC
ENSGALT00000082280.2
6571226
6677011
-
Intron
82656
chr1
6596812
6596827
AC
15
+
7
AC
ENSGALT00000082280.2
6571226
6677011
-
Intron
80184
chr1
6598650
6598662
AGAGGG
12
-
2
CCTCTC
ENSGALT00000082280.2
6571226
6677011
-
Intron
78349
chr1
6599592
6599604
AAAG
12
+
3
AAAG
ENSGALT00000082280.2
6571226
6677011
-
Intron
77407
chr1
6600571
6600589
A
18
+
18
A
ENSGALT00000082280.2
6571226
6677011
-
Intron
76422
chr1
6601542
6601557
AAAAC
15
-
3
TTGTT
ENSGALT00000082280.2
6571226
6677011
-
Intron
75454
chr1
6601781
6601793
AAATTG
12
-
2
TTTCAA
ENSGALT00000082280.2
6571226
6677011
-
Exon
75218
chr1
6601919
6601934
A
15
-
15
T
ENSGALT00000082280.2
6571226
6677011
-
Intron
75077
chr1
6602753
6602765
AAAAAC
12
-
2
TGTTTT
ENSGALT00000082280.2
6571226
6677011
-
Intron
74246
chr1
6603277
6603291
AAACC
14
-
2
GGTTT
ENSGALT00000082280.2
6571226
6677011
-
Intron
73720
chr1
6604065
6604078
AGC
13
-
4
TGC
ENSGALT00000082280.2
6571226
6677011
-
Intron
72933
chr1
6605248
6605260
AAAATG
12
+
2
ATGAAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
71751
chr1
6606353
6606365
AAAATT
12
+
2
TTAAAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
70646
chr1
6606361
6606374
A
13
+
13
A
ENSGALT00000082280.2
6571226
6677011
-
Intron
70637
chr1
6607331
6607343
ACAGT
12
-
2
CTGTA
ENSGALT00000082280.2
6571226
6677011
-
Intron
69668
chr1
6607641
6607658
AAAAC
17
+
3
AAAAC
ENSGALT00000082280.2
6571226
6677011
-
Intron
69353
chr1
6607972
6607984
AAAT
12
+
3
ATAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
69027
chr1
6608007
6608021
A
14
+
14
A
ENSGALT00000082280.2
6571226
6677011
-
Intron
68990