Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8801 to 8825 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
6557352
6557364
AATGC
12
+
2
CAATG
ENSGALT00000071983.2
6569105
6679372
-
Intergenic
122008
chr1
6559184
6559196
AAAGAG
12
+
2
GAGAAA
ENSGALT00000071983.2
6569105
6679372
-
Intergenic
120176
chr1
6560209
6560221
AAAAAT
12
+
2
AAAAAT
ENSGALT00000071983.2
6569105
6679372
-
Intergenic
119151
chr1
6561588
6561606
A
18
+
18
A
ENSGALT00000071983.2
6569105
6679372
-
Intergenic
117766
chr1
6564828
6564843
A
15
-
15
T
ENSGALT00000071983.2
6569105
6679372
-
Intergenic
114529
chr1
6565668
6565691
A
23
+
23
A
ENSGALT00000071983.2
6569105
6679372
-
Intergenic
113681
chr1
6566091
6566103
AAAAGC
12
+
2
AGCAAA
ENSGALT00000071983.2
6569105
6679372
-
Intergenic
113269
chr1
6569112
6569124
AAT
12
-
4
ATT
ENSGALT00000071983.2
6569105
6679372
-
Exon
110248
chr1
6570055
6570069
A
14
+
14
A
ENSGALT00000071983.2
6569105
6679372
-
Exon
109303
chr1
6570786
6570798
AAATGT
12
-
2
CATTTA
ENSGALT00000071983.2
6569105
6679372
-
Exon
108574
chr1
6570995
6571010
AATAGC
15
-
2
TATTGC
ENSGALT00000071983.2
6569105
6679372
-
Exon
108362
chr1
6573927
6573939
AAGGAG
12
-
2
TCCTTC
ENSGALT00000082280.2
6571226
6677011
-
Intron
103072
chr1
6575502
6575515
A
13
+
13
A
ENSGALT00000082280.2
6571226
6677011
-
Intron
101496
chr1
6576535
6576547
AT
12
+
6
AT
ENSGALT00000082280.2
6571226
6677011
-
Intron
100464
chr1
6576754
6576767
ACATAG
13
-
2
GTCTAT
ENSGALT00000082280.2
6571226
6677011
-
Intron
100244
chr1
6576831
6576861
AAAG
30
+
7
AAGA
ENSGALT00000082280.2
6571226
6677011
-
Intron
100150
chr1
6577657
6577671
ACTAT
14
-
2
TATAG
ENSGALT00000082280.2
6571226
6677011
-
Intron
99340
chr1
6577709
6577721
AAAGAG
12
+
2
GAGAAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
99290
chr1
6580447
6580460
AAAAT
13
-
2
TTTTA
ENSGALT00000082280.2
6571226
6677011
-
Intron
96551
chr1
6580531
6580545
AAAAAT
14
+
2
AAAATA
ENSGALT00000082280.2
6571226
6677011
-
Intron
96466
chr1
6582014
6582032
AAT
18
-
6
ATT
ENSGALT00000082280.2
6571226
6677011
-
Intron
94979
chr1
6582031
6582043
AAAATT
12
-
2
TTTTAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
94968
chr1
6583257
6583269
AAGCAG
12
+
2
CAGAAG
ENSGALT00000082280.2
6571226
6677011
-
Intron
93742
chr1
6585067
6585080
AAATG
13
+
2
ATGAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
91931
chr1
6585110
6585134
AAAT
24
+
6
TAAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
91877