Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 9326 to 9350 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
7062393
7062405
AATGAT
12
-
2
TTATCA
ENSGALT00000072279.2
6924409
7137384
+
Intron
137984
chr1
7062655
7062667
AATGAG
12
+
2
ATGAGA
ENSGALT00000072279.2
6924409
7137384
+
Intron
138246
chr1
7065756
7065768
ACACTG
12
-
2
GTGTCA
ENSGALT00000072279.2
6924409
7137384
+
Intron
141347
chr1
7066314
7066326
AGGCC
12
+
2
GGCCA
ENSGALT00000072279.2
6924409
7137384
+
Intron
141905
chr1
7066583
7066595
AAAAGT
12
-
2
ACTTTT
ENSGALT00000072279.2
6924409
7137384
+
Intron
142174
chr1
7066608
7066620
AAAAAG
12
+
2
AGAAAA
ENSGALT00000072279.2
6924409
7137384
+
Intron
142199
chr1
7066908
7066920
AACT
12
-
3
TTAG
ENSGALT00000072279.2
6924409
7137384
+
Intron
142499
chr1
7068110
7068127
A
17
+
17
A
ENSGALT00000072279.2
6924409
7137384
+
Intron
143701
chr1
7070361
7070373
ATCCCC
12
-
2
ATGGGG
ENSGALT00000072279.2
6924409
7137384
+
Intron
145952
chr1
7071180
7071194
ACTGC
14
-
2
CAGTG
ENSGALT00000072279.2
6924409
7137384
+
Intron
146771
chr1
7071463
7071475
AAATGC
12
-
2
TGCATT
ENSGALT00000072279.2
6924409
7137384
+
Intron
147054
chr1
7071815
7071835
A
20
+
20
A
ENSGALT00000072279.2
6924409
7137384
+
Intron
147406
chr1
7074679
7074691
AGCAGG
12
+
2
CAGGAG
ENSGALT00000072279.2
6924409
7137384
+
Intron
150270
chr1
7076279
7076293
AGG
14
+
4
AGG
ENSGALT00000072279.2
6924409
7137384
+
Intron
151870
chr1
7077355
7077370
AC
15
+
7
AC
ENSGALT00000072279.2
6924409
7137384
+
Intron
152946
chr1
7077753
7077766
ACCAGG
13
-
2
GTCCTG
ENSGALT00000072279.2
6924409
7137384
+
Intron
153344
chr1
7078133
7078153
AT
20
+
10
AT
ENSGALT00000072279.2
6924409
7137384
+
Intron
153724
chr1
7079009
7079021
AGATGG
12
+
2
GATGGA
ENSGALT00000072279.2
6924409
7137384
+
Intron
154600
chr1
7079144
7079159
AAAC
15
+
3
AACA
ENSGALT00000072279.2
6924409
7137384
+
Intron
154735
chr1
7079178
7079191
ATCC
13
-
3
ATGG
ENSGALT00000072279.2
6924409
7137384
+
Intron
154769
chr1
7079477
7079498
AGGG
21
-
5
TCCC
ENSGALT00000072279.2
6924409
7137384
+
Intron
155068
chr1
7079510
7079523
AGGG
13
-
3
TCCC
ENSGALT00000072279.2
6924409
7137384
+
Intron
155101
chr1
7079648
7079660
AAAAAG
12
-
2
TTTTCT
ENSGALT00000072279.2
6924409
7137384
+
Intron
155239
chr1
7079893
7079905
ACTCTG
12
-
2
TCAGAG
ENSGALT00000072279.2
6924409
7137384
+
Intron
155484
chr1
7081339
7081351
ACAGG
12
-
2
CTGTC
ENSGALT00000072279.2
6924409
7137384
+
Intron
156930