Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 9426 to 9450 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
7146642
7146655
AAAAG
13
-
2
TTTCT
ENSGALT00000093737.1
7092280
7137720
+
Intergenic
54362
chr1
7146662
7146682
A
20
-
20
T
ENSGALT00000093737.1
7092280
7137720
+
Intergenic
54382
chr1
7146761
7146776
AAT
15
+
5
ATA
ENSGALT00000093737.1
7092280
7137720
+
Intergenic
54481
chr1
7148657
7148673
A
16
+
16
A
ENSGALT00000093737.1
7092280
7137720
+
Intergenic
56377
chr1
7149636
7149648
AAAAT
12
-
2
ATTTT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
50834
chr1
7151316
7151329
AT
13
+
6
AT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
49153
chr1
7151509
7151521
ACCATC
12
-
2
GATGGT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
48961
chr1
7153617
7153629
AACAG
12
+
2
AACAG
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
46853
chr1
7153631
7153643
AAAATT
12
+
2
AAAATT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
46839
chr1
7153649
7153663
A
14
+
14
A
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
46819
chr1
7156210
7156224
AATGC
14
-
2
TGCAT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
44258
chr1
7157550
7157562
ACC
12
-
4
GTG
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
42920
chr1
7157731
7157743
ACC
12
+
4
CCA
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
42739
chr1
7158442
7158454
ATCCCC
12
-
2
GATGGG
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
42028
chr1
7159009
7159021
AGATC
12
-
2
TCTGA
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
41461
chr1
7159200
7159215
A
15
-
15
T
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
41267
chr1
7160896
7160913
AAT
17
-
5
TTA
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
39569
chr1
7163967
7163980
AGC
13
-
4
CTG
ENSGALT00000082107.2
7161428
7200482
-
Intron
36502
chr1
7168919
7168932
ATCCCC
13
-
2
ATGGGG
ENSGALT00000082107.2
7161428
7200482
-
Intron
31550
chr1
7169230
7169242
AACAGG
12
-
2
TTCCTG
ENSGALT00000082107.2
7161428
7200482
-
Intron
31240
chr1
7169629
7169641
AAGTGG
12
-
2
TTCCAC
ENSGALT00000082107.2
7161428
7200482
-
Intron
30841
chr1
7169878
7169890
ACACAT
12
+
2
TACACA
ENSGALT00000082107.2
7161428
7200482
-
Intron
30592
chr1
7170987
7170999
AAATGG
12
-
2
CCATTT
ENSGALT00000082107.2
7161428
7200482
-
Intron
29483
chr1
7172228
7172242
AGATGC
14
-
2
CATCTG
ENSGALT00000082107.2
7161428
7200482
-
Intron
28240
chr1
7172272
7172284
AACCC
12
+
2
CCCAA
ENSGALT00000082107.2
7161428
7200482
-
Intron
28198