Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 9476 to 9500 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
7200352
7200364
AGCCG
12
-
2
GCTCG
ENSGALT00000082107.2
7161428
7200482
-
Exon
118
chr1
7200428
7200441
AGCCCC
13
+
2
CCCCAG
ENSGALT00000082107.2
7161428
7200482
-
Exon
41
chr1
7200449
7200462
AGC
13
+
4
CAG
ENSGALT00000082107.2
7161428
7200482
-
Exon
20
chr1
7200686
7200699
AAT
13
+
4
AAT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-204
chr1
7200840
7200852
AGGG
12
+
3
GGGA
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-358
chr1
7201598
7201614
ACAG
16
-
4
TCTG
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-1116
chr1
7201620
7201632
AAGCAG
12
-
2
TCTGCT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-1138
chr1
7201963
7201976
AAGCAG
13
+
2
AAGCAG
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-1481
chr1
7204427
7204440
ACAGAG
13
-
2
TGTCTC
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-3945
chr1
7204547
7204559
AGCTC
12
+
2
CTCAG
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-4065
chr1
7204978
7204992
AAGGAG
14
-
2
CCTTCT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-4496
chr1
7205109
7205121
AACTGC
12
-
2
CAGTTG
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-4627
chr1
7205183
7205195
ACAGGC
12
-
2
TGCCTG
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-4701
chr1
7205343
7205357
AGAGC
14
-
2
GCTCT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-4861
chr1
7205430
7205442
ACTGGC
12
+
2
GGCACT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-4948
chr1
7205817
7205831
AAGAAT
14
+
2
AAGAAT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-5335
chr1
7206332
7206344
AAGCTG
12
-
2
AGCTTC
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-5850
chr1
7206415
7206427
AACCAC
12
+
2
AACCAC
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-5933
chr1
7208431
7208447
AATT
16
+
4
TTAA
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-7949
chr1
7209650
7209663
AT
13
+
6
TA
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-9168
chr1
7212061
7212073
AACCTC
12
+
2
CAACCT
ENSGALT00000082107.2
7161428
7200482
-
Intergenic
-11579
chr1
7214600
7214615
AAAACC
15
-
2
TTTTGG
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-11188
chr1
7215644
7215656
ACTCTC
12
+
2
CTCTCA
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-10147
chr1
7215867
7215879
AGAGC
12
-
2
GCTCT
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-9924
chr1
7216358
7216393
AAT
35
-
11
TAT
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-9410