Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 9501 to 9525 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
7218539
7218552
AAAT
13
+
3
AATA
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-7251
chr1
7219141
7219153
AAGACC
12
+
2
CAAGAC
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-6650
chr1
7220038
7220050
AAAAGT
12
-
2
ACTTTT
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-5753
chr1
7221388
7221407
AGAGC
19
+
3
GCAGA
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-4396
chr1
7221555
7221573
AAC
18
+
6
CAA
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-4230
chr1
7221926
7221938
AATGT
12
-
2
CATTA
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-3865
chr1
7222375
7222387
ACCAT
12
+
2
ATACC
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-3416
chr1
7223088
7223101
ACACAG
13
+
2
ACAGAC
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-2702
chr1
7223838
7223858
AAC
20
-
6
TTG
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-1945
chr1
7224106
7224122
AAATCT
16
+
2
AAATCT
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
-1681
chr1
7227184
7227196
ATCCCC
12
-
2
GATGGG
ENSGALT00000022327.7
7225803
7245380
+
Intron
1381
chr1
7227471
7227483
AATGTG
12
+
2
GTGAAT
ENSGALT00000022327.7
7225803
7245380
+
Exon
1668
chr1
7227673
7227685
AAGCT
12
+
2
CTAAG
ENSGALT00000022327.7
7225803
7245380
+
Intron
1870
chr1
7228400
7228412
AGCTGC
12
+
2
AGCTGC
ENSGALT00000022327.7
7225803
7245380
+
Intron
2597
chr1
7228692
7228706
ACAT
14
+
3
TACA
ENSGALT00000022327.7
7225803
7245380
+
Intron
2889
chr1
7229010
7229023
ACACTC
13
-
2
GAGTGT
ENSGALT00000022327.7
7225803
7245380
+
Intron
3207
chr1
7231173
7231185
AATGGT
12
+
2
TGGTAA
ENSGALT00000022327.7
7225803
7245380
+
Intron
5370
chr1
7233368
7233384
AAAAC
16
-
3
TGTTT
ENSGALT00000022327.7
7225803
7245380
+
Intron
7565
chr1
7235628
7235640
AAACC
12
-
2
TGGTT
ENSGALT00000022327.7
7225803
7245380
+
Intron
9825
chr1
7236600
7236612
ACCTGC
12
+
2
CTGCAC
ENSGALT00000022327.7
7225803
7245380
+
Intron
10797
chr1
7243352
7243364
AAAATC
12
-
2
ATTTTG
ENSGALT00000022327.7
7225803
7245380
+
Intron
17549
chr1
7246296
7246309
AAAAAT
13
-
2
TTTTAT
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
20493
chr1
7246412
7246424
AT
12
+
6
AT
ENSGALT00000022327.7
7225803
7245380
+
Intergenic
20609
chr1
7247769
7247848
A
79
+
79
A
ENSGALT00000065648.2
7248738
7263920
+
Intergenic
-890
chr1
7248026
7248038
ACCC
12
+
3
CCCA
ENSGALT00000065648.2
7248738
7263920
+
Intergenic
-700