Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 9526 to 9550 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
7248562
7248575
AAAGGG
13
+
2
AAAGGG
ENSGALT00000065648.2
7248738
7263920
+
Intergenic
-163
chr1
7248852
7248864
AGGGG
12
+
2
GAGGG
ENSGALT00000098658.1
7248759
7263920
+
Intron
93
chr1
7249393
7249405
AGGATG
12
-
2
ATCCTC
ENSGALT00000094377.1
7249016
7265003
+
Intron
377
chr1
7251331
7251343
AGCTC
12
-
2
AGCTG
ENSGALT00000094377.1
7249016
7265003
+
Exon
2315
chr1
7252054
7252068
AAAGG
14
+
2
AAAGG
ENSGALT00000094377.1
7249016
7265003
+
Exon
3038
chr1
7252374
7252388
AAAAG
14
-
2
TTTCT
ENSGALT00000094377.1
7249016
7265003
+
Intron
3358
chr1
7252730
7252742
AAAAAT
12
-
2
TTTTTA
ENSGALT00000094377.1
7249016
7265003
+
Intron
3714
chr1
7253823
7253835
AAAACC
12
-
2
TTGGTT
ENSGALT00000094377.1
7249016
7265003
+
Intron
4807
chr1
7258832
7258846
AAACAG
14
+
2
AACAGA
ENSGALT00000098658.1
7248759
7263920
+
Exon
10073
chr1
7259626
7259638
A
12
+
12
A
ENSGALT00000094377.1
7249016
7265003
+
Intron
10610
chr1
7260654
7260667
AAGCAG
13
+
2
AAGCAG
ENSGALT00000098658.1
7248759
7263920
+
Exon
11895
chr1
7262006
7262020
AGCCTC
14
-
2
AGGCTG
ENSGALT00000098658.1
7248759
7263920
+
Exon
13247
chr1
7265925
7265940
AGCCTG
15
+
2
CCTGAG
ENSGALT00000094377.1
7249016
7265003
+
Intergenic
16909
chr1
7267029
7267047
C
18
-
18
G
ENSGALT00000094377.1
7249016
7265003
+
Intergenic
18013
chr1
7267468
7267480
AGCCC
12
-
2
TGGGC
ENSGALT00000076689.3
7269227
7281113
-
Intergenic
13633
chr1
7269599
7269612
AGAGG
13
+
2
GGAGA
ENSGALT00000085647.2
7269227
7279921
-
Intron
10309
chr1
7270335
7270347
AAC
12
+
4
AAC
ENSGALT00000085647.2
7269227
7279921
-
Intron
9574
chr1
7271017
7271035
A
18
+
18
A
ENSGALT00000085647.2
7269227
7279921
-
Intron
8886
chr1
7271038
7271050
AAAACC
12
+
2
AAAACC
ENSGALT00000085647.2
7269227
7279921
-
Intron
8871
chr1
7272417
7272430
AAAT
13
+
3
ATAA
ENSGALT00000085647.2
7269227
7279921
-
Intron
7491
chr1
7272549
7272561
AGCC
12
+
3
CCAG
ENSGALT00000085647.2
7269227
7279921
-
Intron
7360
chr1
7273078
7273090
AAAC
12
-
3
GTTT
ENSGALT00000085647.2
7269227
7279921
-
Exon
6831
chr1
7273111
7273125
A
14
+
14
A
ENSGALT00000085647.2
7269227
7279921
-
Intron
6796
chr1
7274006
7274021
AC
15
+
7
CA
ENSGALT00000085647.2
7269227
7279921
-
Intron
5900
chr1
7274424
7274436
AAGACC
12
+
2
CCAAGA
ENSGALT00000085647.2
7269227
7279921
-
Intron
5485