Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 9551 to 9575 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
7274882
7274895
AAATGG
13
+
2
ATGGAA
ENSGALT00000085647.2
7269227
7279921
-
Intron
5026
chr1
7275753
7275765
AAC
12
+
4
CAA
ENSGALT00000085647.2
7269227
7279921
-
Intron
4156
chr1
7276333
7276348
AAAAC
15
-
3
GTTTT
ENSGALT00000085647.2
7269227
7279921
-
Intron
3573
chr1
7277491
7277503
ACACTC
12
+
2
TCACAC
ENSGALT00000085647.2
7269227
7279921
-
Intron
2418
chr1
7277836
7277848
AGG
12
-
4
CCT
ENSGALT00000085647.2
7269227
7279921
-
Intron
2073
chr1
7278606
7278618
ACTCCT
12
+
2
CCTACT
ENSGALT00000085647.2
7269227
7279921
-
Intron
1303
chr1
7281015
7281027
ACCCCC
12
-
2
TGGGGG
ENSGALT00000076689.3
7269227
7281113
-
Exon
86
chr1
7283505
7283517
ATGCC
12
-
2
TGGCA
ENSGALT00000099851.1
7281845
7286375
-
Intron
2858
chr1
7284610
7284622
AATGGG
12
+
2
GAATGG
ENSGALT00000099851.1
7281845
7286375
-
Intron
1753
chr1
7285272
7285292
A
20
+
20
A
ENSGALT00000099851.1
7281845
7286375
-
Intron
1083
chr1
7286567
7286580
A
13
-
13
T
ENSGALT00000099851.1
7281845
7286375
-
Intergenic
-192
chr1
7288140
7288157
AAAAAT
17
+
2
AAAATA
ENSGALT00000091531.1
7287501
7311282
-
Exon
23125
chr1
7288564
7288578
AAAAG
14
-
2
TTTTC
ENSGALT00000023502.6
7287562
7308381
-
Exon
19803
chr1
7291546
7291563
AAC
17
-
5
TTG
ENSGALT00000023502.6
7287562
7308381
-
Intron
16818
chr1
7291690
7291704
AAAATC
14
+
2
AAATCA
ENSGALT00000023502.6
7287562
7308381
-
Intron
16677
chr1
7293392
7293408
AACAGT
16
-
2
CTGTTA
ENSGALT00000023502.6
7287562
7308381
-
Intron
14973
chr1
7294675
7294691
AAAC
16
+
4
ACAA
ENSGALT00000023502.6
7287562
7308381
-
Intron
13690
chr1
7295015
7295027
AAAT
12
+
3
AAAT
ENSGALT00000023502.6
7287562
7308381
-
Intron
13354
chr1
7295119
7295132
ACAGGC
13
+
2
ACAGGC
ENSGALT00000023502.6
7287562
7308381
-
Intron
13249
chr1
7295717
7295731
AAATGG
14
-
2
TTCCAT
ENSGALT00000023502.6
7287562
7308381
-
Intron
12650
chr1
7295770
7295782
AAAAAT
12
+
2
AAAAAT
ENSGALT00000023502.6
7287562
7308381
-
Intron
12599
chr1
7296459
7296471
ACTCC
12
-
2
GAGTG
ENSGALT00000023502.6
7287562
7308381
-
Intron
11910
chr1
7296531
7296543
AAAAAT
12
+
2
AAATAA
ENSGALT00000023502.6
7287562
7308381
-
Intron
11838
chr1
7296894
7296906
AGATCC
12
+
2
TCCAGA
ENSGALT00000023502.6
7287562
7308381
-
Intron
11475
chr1
7302289
7302301
ACACTG
12
+
2
CTGACA
ENSGALT00000023502.6
7287562
7308381
-
Intron
6080