Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 101 to 125 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
41604
41616
AGCCCG
12
-
2
GGGCTC
ENSGALT00000087980.2
39057
42408
-
Intron
792
chr1
41924
41936
ACTGCG
12
-
2
CAGTCG
ENSGALT00000087980.2
39057
42408
-
Exon
472
chr1
41994
42008
CCCCG
14
-
2
GGGGC
ENSGALT00000087980.2
39057
42408
-
Exon
400
chr1
42582
42594
AACCC
12
+
2
CCCAA
ENSGALT00000075758.2
31439
243537
+
Intron
11143
chr1
42890
42902
ACCAG
12
+
2
CCAGA
ENSGALT00000075758.2
31439
243537
+
Intron
11451
chr1
43021
43033
CCCCGG
12
-
2
CGGGGC
ENSGALT00000075758.2
31439
243537
+
Intron
11582
chr1
43564
43576
AGCCC
12
+
2
CCAGC
ENSGALT00000075758.2
31439
243537
+
Intron
12125
chr1
43669
43681
AACGGC
12
+
2
ACGGCA
ENSGALT00000075758.2
31439
243537
+
Intron
12230
chr1
45004
45016
AATTC
12
+
2
ATTCA
ENSGALT00000075758.2
31439
243537
+
Intron
13565
chr1
45198
45212
AGCCCT
14
-
2
AGGGCT
ENSGALT00000075758.2
31439
243537
+
Intron
13759
chr1
46904
46916
ACCAGG
12
+
2
CCAGGA
ENSGALT00000075758.2
31439
243537
+
Intron
15465
chr1
48430
48442
AGCCCG
12
+
2
GAGCCC
ENSGALT00000075758.2
31439
243537
+
Intron
16991
chr1
48824
48836
ACATCC
12
-
2
GGATGT
ENSGALT00000075758.2
31439
243537
+
Intron
17385
chr1
49972
49984
AGG
12
-
4
TCC
ENSGALT00000075758.2
31439
243537
+
Intron
18533
chr1
52223
52235
AACTTC
12
+
2
CTTCAA
ENSGALT00000075758.2
31439
243537
+
Intron
20784
chr1
53930
53942
ACAGGG
12
+
2
CAGGGA
ENSGALT00000075758.2
31439
243537
+
Intron
22491
chr1
54661
54673
ACAGC
12
-
2
GTGCT
ENSGALT00000075758.2
31439
243537
+
Intron
23222
chr1
54999
55012
ACCAGC
13
+
2
CAGCAC
ENSGALT00000075758.2
31439
243537
+
Intron
23560
chr1
57493
57506
AGCTGC
13
+
2
CTGCAG
ENSGALT00000075758.2
31439
243537
+
Intron
26054
chr1
58275
58301
AGCGGG
26
+
4
GGAGCG
ENSGALT00000075758.2
31439
243537
+
Intron
26836
chr1
58724
58752
CCGCG
28
-
5
CGCGG
ENSGALT00000075758.2
31439
243537
+
Intron
27285
chr1
59489
59501
AAGCTG
12
-
2
TCAGCT
ENSGALT00000075758.2
31439
243537
+
Intron
28050
chr1
59522
59535
CCCG
13
+
3
CCGC
ENSGALT00000075758.2
31439
243537
+
Intron
28083
chr1
61625
61637
AGCAGG
12
+
2
AGCAGG
ENSGALT00000075758.2
31439
243537
+
Intron
30186
chr1
62325
62338
AGCTGC
13
+
2
CTGCAG
ENSGALT00000075758.2
31439
243537
+
Intron
30886