Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 151 to 175 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
92386
92399
AAATCT
13
-
2
AGATTT
ENSGALT00000078781.2
75379
90530
+
Intergenic
17007
chr1
94487
94501
AGAGC
14
-
2
CTGCT
ENSGALT00000078781.2
75379
90530
+
Intergenic
19108
chr1
94910
94923
AC
13
-
6
GT
ENSGALT00000078781.2
75379
90530
+
Intergenic
19531
chr1
96002
96014
ACCGG
12
-
2
CGGTC
ENSGALT00000078781.2
75379
90530
+
Intergenic
20623
chr1
96609
96621
AAAATG
12
-
2
CATTTT
ENSGALT00000078781.2
75379
90530
+
Intergenic
21230
chr1
97197
97209
AGCCCC
12
+
2
CAGCCC
ENSGALT00000078781.2
75379
90530
+
Intergenic
21818
chr1
97658
97670
AATTAG
12
+
2
AGAATT
ENSGALT00000078781.2
75379
90530
+
Intergenic
22279
chr1
97693
97705
AAAGT
12
+
2
AAAGT
ENSGALT00000078781.2
75379
90530
+
Intergenic
22314
chr1
97824
97837
AAAAC
13
-
2
TTTGT
ENSGALT00000078781.2
75379
90530
+
Intergenic
22445
chr1
98034
98047
AAC
13
-
4
TGT
ENSGALT00000078781.2
75379
90530
+
Intergenic
22655
chr1
98304
98318
AGC
14
-
4
TGC
ENSGALT00000078781.2
75379
90530
+
Intergenic
22925
chr1
99228
99240
ACTGG
12
-
2
TCCAG
ENSGALT00000095864.1
106317
118568
-
Intergenic
19328
chr1
99797
99809
AAAATC
12
-
2
TTTGAT
ENSGALT00000095864.1
106317
118568
-
Intergenic
18759
chr1
100280
100292
AAT
12
+
4
AAT
ENSGALT00000095864.1
106317
118568
-
Intergenic
18276
chr1
100322
100336
AAAT
14
-
3
TTAT
ENSGALT00000095864.1
106317
118568
-
Intergenic
18232
chr1
100868
100880
ACCGCG
12
-
2
TCGCGG
ENSGALT00000095864.1
106317
118568
-
Intergenic
17688
chr1
102897
102912
AATCAG
15
-
2
CTGATT
ENSGALT00000095864.1
106317
118568
-
Intergenic
15656
chr1
103927
103939
AATGGC
12
+
2
GCAATG
ENSGALT00000095864.1
106317
118568
-
Intergenic
14629
chr1
104116
104129
AGGC
13
-
3
CCTG
ENSGALT00000095864.1
106317
118568
-
Intergenic
14439
chr1
106259
106271
AATGAG
12
-
2
CATTCT
ENSGALT00000095864.1
106317
118568
-
Intergenic
12297
chr1
107241
107256
AAAC
15
+
3
AAAC
ENSGALT00000095864.1
106317
118568
-
Intron
11312
chr1
107814
107827
AGAGG
13
+
2
GGAGA
ENSGALT00000095864.1
106317
118568
-
Intron
10741
chr1
107842
107854
AAAACC
12
+
2
AAAACC
ENSGALT00000095864.1
106317
118568
-
Intron
10714
chr1
113274
113286
AAAAC
12
+
2
ACAAA
ENSGALT00000095864.1
106317
118568
-
Intron
5282
chr1
116783
116796
ACACTG
13
+
2
CACTGA
ENSGALT00000095864.1
106317
118568
-
Intron
1772