Showing repeats of Xenopus tropicalis (Western clawed frog)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 1826 to 1850 repeats of 1426294
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
2411688
2411704
C
16
-
16
G
NM_001097305
3201002
4109655
+
Intergenic
-789298
chr1
2412266
2412278
AGGGGG
12
+
2
GGGGGA
NM_001097305
3201002
4109655
+
Intergenic
-788724
chr1
2412369
2412381
AAACAC
12
+
2
CAAACA
NM_001097305
3201002
4109655
+
Intergenic
-788621
chr1
2412651
2412664
C
13
-
13
G
NM_001097305
3201002
4109655
+
Intergenic
-788338
chr1
2413457
2413471
A
14
+
14
A
NM_001097305
3201002
4109655
+
Intergenic
-787531
chr1
2413813
2413826
AAAAAC
13
-
2
TGTTTT
NM_001097305
3201002
4109655
+
Intergenic
-787176
chr1
2413821
2413833
A
12
-
12
T
NM_001097305
3201002
4109655
+
Intergenic
-787169
chr1
2420189
2420202
AGGGGG
13
-
2
CTCCCC
NM_001097305
3201002
4109655
+
Intergenic
-780800
chr1
2424118
2424131
AAAAT
13
-
2
TATTT
NM_001097305
3201002
4109655
+
Intergenic
-776871
chr1
2425459
2425472
AAAAAT
13
+
2
ATAAAA
NM_001097305
3201002
4109655
+
Intergenic
-775530
chr1
2425900
2425912
ACACAT
12
-
2
ATGTGT
NM_001097305
3201002
4109655
+
Intergenic
-775090
chr1
2425938
2425953
ACACAT
15
-
2
TGTATG
NM_001097305
3201002
4109655
+
Intergenic
-775049
chr1
2426010
2426022
ACACAG
12
+
2
ACACAG
NM_001097305
3201002
4109655
+
Intergenic
-774980
chr1
2426255
2426268
ACATAG
13
+
2
ACATAG
NM_001097305
3201002
4109655
+
Intergenic
-774734
chr1
2426827
2426844
AAACAT
17
-
2
ATGTTT
NM_001097305
3201002
4109655
+
Intergenic
-774158
chr1
2427384
2427396
AAATAC
12
-
2
ATTTGT
NM_001097305
3201002
4109655
+
Intergenic
-773606
chr1
2432879
2432894
AAAC
15
+
3
AAAC
NM_001097305
3201002
4109655
+
Intergenic
-768108
chr1
2436396
2436409
AC
13
+
6
AC
NM_001097305
3201002
4109655
+
Intergenic
-764593
chr1
2436867
2436879
AAAGAT
12
-
2
TTTATC
NM_001097305
3201002
4109655
+
Intergenic
-764123
chr1
2444489
2444501
ACACCC
12
+
2
CCCACA
NM_001097305
3201002
4109655
+
Intergenic
-756501
chr1
2447445
2447457
AAAAT
12
+
2
ATAAA
NM_001097305
3201002
4109655
+
Intergenic
-753545
chr1
2448594
2448607
AACGCG
13
+
2
CGCGAA
NM_001097305
3201002
4109655
+
Intergenic
-752395
chr1
2450722
2450736
ACTC
14
+
3
CTCA
NM_001097305
3201002
4109655
+
Intergenic
-750266
chr1
2452067
2452079
AATGC
12
+
2
TGCAA
NM_001097305
3201002
4109655
+
Intergenic
-748923
chr1
2452390
2452414
AT
24
+
12
AT
NM_001097305
3201002
4109655
+
Intergenic
-748588