Showing repeats of Xenopus tropicalis (Western clawed frog)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 1876 to 1900 repeats of 1426294
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
2482844
2482858
ACTC
14
+
3
CTCA
NM_001097305
3201002
4109655
+
Intergenic
-718144
chr1
2485532
2485549
AAAAAC
17
-
2
TTTTTG
NM_001097305
3201002
4109655
+
Intergenic
-715453
chr1
2486297
2486313
AAGAC
16
+
3
AGACA
NM_001097305
3201002
4109655
+
Intergenic
-714689
chr1
2486803
2486816
A
13
+
13
A
NM_001097305
3201002
4109655
+
Intergenic
-714186
chr1
2487157
2487169
AAAAAC
12
-
2
TGTTTT
NM_001097305
3201002
4109655
+
Intergenic
-713833
chr1
2487165
2487177
AAAAT
12
-
2
TTTTA
NM_001097305
3201002
4109655
+
Intergenic
-713825
chr1
2489817
2489829
AATGT
12
+
2
AATGT
NM_001097305
3201002
4109655
+
Intergenic
-711173
chr1
2489963
2489975
ACAGGT
12
-
2
TGTACC
NM_001097305
3201002
4109655
+
Intergenic
-711027
chr1
2492429
2492441
AAAT
12
+
3
AAAT
NM_001097305
3201002
4109655
+
Intergenic
-708561
chr1
2493007
2493019
A
12
+
12
A
NM_001097305
3201002
4109655
+
Intergenic
-707983
chr1
2493312
2493327
AAAAAT
15
-
2
TTTATT
NM_001097305
3201002
4109655
+
Intergenic
-707675
chr1
2537849
2537861
AAT
12
+
4
ATA
NM_001097305
3201002
4109655
+
Intergenic
-663141
chr1
2539993
2540005
A
12
-
12
T
NM_001097305
3201002
4109655
+
Intergenic
-660997
chr1
2545327
2545339
AATATG
12
-
2
ATATTC
NM_001097305
3201002
4109655
+
Intergenic
-655663
chr1
2547472
2547484
AAAAC
12
+
2
AAAAC
NM_001097305
3201002
4109655
+
Intergenic
-653518
chr1
2547635
2547651
AAAAC
16
+
3
AAACA
NM_001097305
3201002
4109655
+
Intergenic
-653351
chr1
2550602
2550615
AAAGC
13
-
2
TTTGC
NM_001097305
3201002
4109655
+
Intergenic
-650387
chr1
2550822
2550834
AAGGG
12
-
2
CTTCC
NM_001097305
3201002
4109655
+
Intergenic
-650168
chr1
2551549
2551564
AATATG
15
-
2
ATATTC
NM_001097305
3201002
4109655
+
Intergenic
-649438
chr1
2551671
2551683
AAATAT
12
-
2
TATTTA
NM_001097305
3201002
4109655
+
Intergenic
-649319
chr1
2552685
2552698
AAAAAT
13
+
2
AATAAA
NM_001097305
3201002
4109655
+
Intergenic
-648304
chr1
2552776
2552789
AATAGG
13
+
2
AATAGG
NM_001097305
3201002
4109655
+
Intergenic
-648213
chr1
2552948
2552961
AACTCT
13
+
2
CTCTAA
NM_001097305
3201002
4109655
+
Intergenic
-648041
chr1
2553162
2553174
AATGT
12
+
2
ATGTA
NM_001097305
3201002
4109655
+
Intergenic
-647828
chr1
2553528
2553540
AAATGT
12
+
2
TGTAAA
NM_001097305
3201002
4109655
+
Intergenic
-647462