Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3101 to 3125 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
2257998
2258011
AAATTG
13
-
2
AATTTC
F12B6.1b
2255923
2272820
-
Intron
14809
chrI
2260115
2260127
AAAATT
12
-
2
AATTTT
F12B6.1b
2255923
2272820
-
Intron
12693
chrI
2261439
2261451
AATTAT
12
+
2
TATAAT
F12B6.1b
2255923
2272820
-
Intron
11369
chrI
2261989
2262002
AAGCCT
13
+
2
GCCTAA
F12B6.1b
2255923
2272820
-
Intron
10818
chrI
2262019
2262031
AAGCCT
12
+
2
GCCTAA
F12B6.1b
2255923
2272820
-
Intron
10789
chrI
2262037
2262053
AAGCCT
16
+
2
GCCTAA
F12B6.1b
2255923
2272820
-
Intron
10767
chrI
2262060
2262072
ACGCCT
12
+
2
CGCCTA
F12B6.1b
2255923
2272820
-
Intron
10748
chrI
2262067
2262080
AAGCCT
13
+
2
GCCTAA
F12B6.1b
2255923
2272820
-
Intron
10740
chrI
2262083
2262103
AAGCCT
20
+
3
AAGCCT
F12B6.1b
2255923
2272820
-
Intron
10717
chrI
2262104
2262116
AAGCCT
12
+
2
CCTAAG
F12B6.1b
2255923
2272820
-
Intron
10704
chrI
2262140
2262158
AAGCCT
18
+
3
CCTAAG
F12B6.1b
2255923
2272820
-
Intron
10662
chrI
2262172
2262191
AAGCCT
19
+
3
TAAGCC
F12B6.1b
2255923
2272820
-
Intron
10629
chrI
2262205
2262221
AAGCCT
16
+
2
GCCTAA
F12B6.1b
2255923
2272820
-
Intron
10599
chrI
2262235
2262252
ACGCCT
17
+
2
GCCTAC
F12B6.1b
2255923
2272820
-
Intron
10568
chrI
2262247
2262275
AAGCCT
28
+
4
GCCTAA
F12B6.1b
2255923
2272820
-
Intron
10545
chrI
2263998
2264010
AAAATT
12
+
2
AAAATT
F12B6.1b
2255923
2272820
-
Intron
8810
chrI
2264084
2264096
AAAATT
12
+
2
AAAATT
F12B6.1b
2255923
2272820
-
Intron
8724
chrI
2266675
2266689
AAAATT
14
+
2
TTAAAA
F12B6.1b
2255923
2272820
-
Intron
6131
chrI
2268054
2268068
AAAAAT
14
+
2
ATAAAA
F12B6.1b
2255923
2272820
-
Intron
4752
chrI
2268443
2268455
AAAAAT
12
-
2
ATTTTT
F12B6.1b
2255923
2272820
-
Intron
4365
chrI
2269402
2269437
AAGCCT
35
-
5
TAGGCT
Y39G10AL.6
2269391
2269442
-
Exon
5
chrI
2269480
2269493
AAGCCT
13
-
2
TAGGCT
F12B6.1b
2255923
2272820
-
Intron
3327
chrI
2270961
2270973
AAAATG
12
+
2
TGAAAA
F12B6.1b
2255923
2272820
-
Intron
1847
chrI
2272126
2272140
AAAATT
14
-
2
AATTTT
F12B6.1b
2255923
2272820
-
Intron
680
chrI
2272136
2272148
AAAATT
12
+
2
TTAAAA
F12B6.1b
2255923
2272820
-
Intron
672