Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3151 to 3175 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
2291884
2291896
AATCGG
12
-
2
ATTCCG
Y39G10AL.3.1
2281508
2291183
-
Intergenic
-701
chrI
2295238
2295250
AC
12
+
6
AC
Y39G10AR.11.1
2293132
2296738
+
Intron
2106
chrI
2295710
2295722
AAATTC
12
-
2
TTTGAA
Y39G10AR.11.1
2293132
2296738
+
Intron
2578
chrI
2295874
2295886
AAATTC
12
+
2
TTCAAA
Y39G10AR.11.1
2293132
2296738
+
Intron
2742
chrI
2296474
2296486
AATCAG
12
-
2
TTCTGA
Y39G10AR.11.1
2293132
2296738
+
Exon
3342
chrI
2297402
2297427
CCCG
25
-
6
GCGG
Y39G10AR.12a
2297280
2304393
-
Exon
6966
chrI
2297486
2297499
AAT
13
+
4
ATA
Y39G10AR.12a
2297280
2304393
-
Exon
6894
chrI
2297508
2297524
AC
16
-
8
TG
Y39G10AR.12a
2297280
2304393
-
Exon
6869
chrI
2298264
2298276
AAAACG
12
+
2
CGAAAA
Y39G10AR.12a
2297280
2304393
-
Intron
6117
chrI
2298316
2298329
AAAACG
13
-
2
GTTTTC
Y39G10AR.12a
2297280
2304393
-
Intron
6064
chrI
2299331
2299343
AATGT
12
+
2
TGTAA
Y39G10AR.12a
2297280
2304393
-
Intron
5050
chrI
2299642
2299654
AG
12
-
6
TC
Y39G10AR.12a
2297280
2304393
-
Intron
4739
chrI
2299818
2299837
AG
19
-
9
TC
Y39G10AR.12a
2297280
2304393
-
Intron
4556
chrI
2301530
2301543
AACACG
13
+
2
ACGAAC
Y39G10AR.10
2300086
2302823
+
Exon
1444
chrI
2303286
2303301
AGCCGG
15
+
2
GGAGCC
Y39G10AR.12a
2297280
2304393
-
Exon
1092
chrI
2303457
2303470
AGC
13
+
4
GCA
Y39G10AR.12a
2297280
2304393
-
Exon
923
chrI
2303864
2303876
AAAG
12
-
3
TTCT
Y39G10AR.12a
2297280
2304393
-
Exon
517
chrI
2304438
2304457
AAAT
19
+
4
AAAT
Y39G10AR.12a
2297280
2304393
-
Intergenic
-45
chrI
2304493
2304505
AAAAT
12
+
2
AATAA
Y39G10AR.13b
2304512
2306774
-
Intergenic
2269
chrI
2311609
2311622
AAATC
13
+
2
AAATC
Y39G10AR.21c
2310105
2312086
+
Intron
1504
chrI
2312651
2312664
ACGAGG
13
+
2
ACGAGG
Y39G10AR.20
2312496
2313008
+
Exon
155
chrI
2313731
2313743
AAATT
12
-
2
AATTT
Y39G10AR.8
2313271
2316003
+
Intron
460
chrI
2314528
2314540
AAAATT
12
-
2
AATTTT
Y39G10AR.8
2313271
2316003
+
Intron
1257
chrI
2317413
2317425
ACCTCC
12
+
2
CCTCCA
Y39G10AR.7a
2316307
2318285
+
Exon
1106
chrI
2321696
2321711
AAATTT
15
+
2
ATTTAA
Y39G10AR.14a.2
2318291
2321817
-
Intron
106