Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3201 to 3225 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
2352820
2352832
AAAATT
12
+
2
AAAATT
Y39G10AR.25.1
2352835
2356237
+
Intergenic
-3
chrI
2354472
2354488
AAATG
16
+
3
TGAAA
Y39G10AR.25.1
2352835
2356237
+
Intron
1637
chrI
2356110
2356122
AACTC
12
+
2
CTCAA
Y39G10AR.25.1
2352835
2356237
+
Exon
3275
chrI
2356623
2356636
A
13
+
13
A
Y39G10AR.25.2
2352835
2356238
+
Intergenic
3788
chrI
2357178
2357190
AAAAAT
12
+
2
AAAATA
Y39G10AR.3a
2357883
2372964
+
Intergenic
-693
chrI
2357795
2357808
AAATC
13
+
2
CAAAT
Y39G10AR.3a
2357883
2372964
+
Intergenic
-75
chrI
2358004
2358018
A
14
-
14
T
Y39G10AR.3a
2357883
2372964
+
Intron
121
chrI
2358779
2358791
AAGCCT
12
+
2
CCTAAG
Y39G10AR.3b
2358420
2372964
+
Intron
359
chrI
2359822
2359835
AAGATG
13
-
2
TCTTCA
Y39G10AR.3b
2358420
2372964
+
Intron
1402
chrI
2359830
2359843
AAAATG
13
-
2
TTCATT
Y39G10AR.3b
2358420
2372964
+
Intron
1410
chrI
2361228
2361241
AAATCG
13
+
2
CGAAAT
Y39G10AR.3b
2358420
2372964
+
Intron
2808
chrI
2364663
2364675
AACCCC
12
-
2
GTTGGG
Y39G10AR.3b
2358420
2372964
+
Exon
6243
chrI
2365350
2365378
AAGCCT
28
-
4
GCTTAG
Y39G10AR.3b
2358420
2372964
+
Intron
6930
chrI
2366377
2366390
AAAATC
13
-
2
ATTTTG
Y39G10AR.3b
2358420
2372964
+
Intron
7957
chrI
2366552
2366565
AAATTG
13
-
2
TCAATT
Y39G10AR.3b
2358420
2372964
+
Intron
8132
chrI
2367266
2367280
AAAAG
14
+
2
AAAAG
Y39G10AR.3b
2358420
2372964
+
Intron
8846
chrI
2367271
2367283
AAAAAG
12
+
2
AAAAGA
Y39G10AR.3b
2358420
2372964
+
Intron
8851
chrI
2367449
2367462
AAATTT
13
+
2
ATTTAA
Y39G10AR.3b
2358420
2372964
+
Intron
9029
chrI
2368632
2368646
AAAAG
14
-
2
TTTTC
Y39G10AR.3b
2358420
2372964
+
Intron
10212
chrI
2368691
2368713
AAGCCT
22
-
3
TTAGGC
Y39G10AR.31
2368687
2368744
+
Exon
4
chrI
2368709
2368726
AAAGCT
17
-
2
TTAGCT
Y39G10AR.31
2368687
2368744
+
Exon
22
chrI
2368737
2368749
AAGCCT
12
-
2
GCTTAG
Y39G10AR.31
2368687
2368744
+
Exon
50
chrI
2368750
2368768
AAGGCT
18
-
3
CTTAGC
Y39G10AR.3b
2358420
2372964
+
Intron
10330
chrI
2368779
2368802
AAGCCT
23
-
3
GCTTAG
Y39G10AR.29
2368783
2368861
+
Exon
-4
chrI
2368819
2368832
AAGCCT
13
-
2
AGGCTT
Y39G10AR.28
2368783
2368861
-
Exon
29