Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3901 to 3925 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
2871921
2871933
AAAAAG
12
-
2
TTTTTC
Y71F9AL.12
2870608
2875289
-
Intron
3356
chrI
2872634
2872646
AAAT
12
+
3
AAAT
Y71F9AL.12
2870608
2875289
-
Intron
2643
chrI
2873467
2873479
AAAT
12
-
3
ATTT
Y71F9AL.12
2870608
2875289
-
Intron
1810
chrI
2873472
2873485
AAAAT
13
-
2
TTTAT
Y71F9AL.12
2870608
2875289
-
Intron
1804
chrI
2873604
2873616
AATT
12
+
3
AATT
Y71F9AL.12
2870608
2875289
-
Intron
1673
chrI
2873761
2873774
AAAAT
13
+
2
AAAAT
Y71F9AL.12
2870608
2875289
-
Intron
1515
chrI
2875576
2875588
ACGGCG
12
+
2
CGACGG
Y71F9AL.13b.7
2875395
2875974
-
Exon
386
chrI
2876310
2876322
AAATAG
12
+
2
GAAATA
Y71F9AL.13a.1
2875398
2876324
-
Exon
2
chrI
2877279
2877291
AGCTCC
12
+
2
GCTCCA
Y71F9AL.9
2876932
2878523
+
Exon
347
chrI
2877411
2877423
AGCTCC
12
+
2
CCAGCT
Y71F9AL.9
2876932
2878523
+
Exon
479
chrI
2877953
2877967
AAC
14
+
4
AAC
Y71F9AL.9
2876932
2878523
+
Exon
1021
chrI
2878160
2878174
AAATC
14
-
2
TGATT
Y71F9AL.9
2876932
2878523
+
Exon
1228
chrI
2878355
2878367
AT
12
+
6
AT
Y71F9AL.9
2876932
2878523
+
Exon
1423
chrI
2879421
2879433
AAAT
12
+
3
AAAT
Y71F9AL.8
2878578
2880929
+
Intron
843
chrI
2880746
2880761
AAAATT
15
+
2
AAAATT
Y71F9AL.8
2878578
2880929
+
Intron
2168
chrI
2881304
2881316
AAAATT
12
-
2
AATTTT
Y71F9AL.14.2
2880919
2883440
-
Intron
2124
chrI
2882774
2882786
AAAATG
12
-
2
ATTTTC
Y71F9AL.14.2
2880919
2883440
-
Intron
654
chrI
2882808
2882820
AAAATT
12
-
2
AATTTT
Y71F9AL.14.2
2880919
2883440
-
Intron
620
chrI
2882862
2882874
AAAATT
12
-
2
AATTTT
Y71F9AL.14.2
2880919
2883440
-
Intron
566
chrI
2882979
2882991
AAAATG
12
-
2
ATTTTC
Y71F9AL.14.2
2880919
2883440
-
Intron
449
chrI
2883049
2883061
AAAATT
12
-
2
AATTTT
Y71F9AL.14.2
2880919
2883440
-
Intron
379
chrI
2883118
2883130
AAATTT
12
+
2
AAATTT
Y71F9AL.14.2
2880919
2883440
-
Intron
310
chrI
2883700
2883712
AAAAAT
12
+
2
AAATAA
Y71F9AL.16
2883546
2893718
-
Exon
10006
chrI
2884301
2884313
AAATT
12
-
2
AATTT
Y71F9AL.16
2883546
2893718
-
Intron
9405
chrI
2884680
2884693
A
13
-
13
T
Y71F9AL.16
2883546
2893718
-
Intron
9025