Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3926 to 3950 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
2885766
2885778
AAACC
12
+
2
CCAAA
Y71F9AL.16
2883546
2893718
-
Exon
7940
chrI
2885818
2885832
AAGCCG
14
-
2
TCGGCT
Y71F9AL.16
2883546
2893718
-
Exon
7886
chrI
2887059
2887071
AAAATG
12
+
2
GAAAAT
Y71F9AL.16
2883546
2893718
-
Intron
6647
chrI
2889460
2889487
AT
27
+
13
AT
Y71F9AL.16
2883546
2893718
-
Intron
4231
chrI
2889660
2889672
AT
12
+
6
AT
Y71F9AL.16
2883546
2893718
-
Intron
4046
chrI
2891118
2891130
AACTGC
12
-
2
TTGCAG
Y71F9AL.6
2890446
2891261
+
Exon
672
chrI
2892250
2892262
AAAATT
12
-
2
TTAATT
Y71F9AL.16
2883546
2893718
-
Intron
1456
chrI
2892751
2892768
AAAATT
17
-
2
TTTAAT
Y71F9AL.16
2883546
2893718
-
Intron
950
chrI
2893291
2893303
AAATTT
12
+
2
TTTAAA
Y71F9AL.17.2
2895329
2900860
-
Intergenic
7557
chrI
2894021
2894033
A
12
+
12
A
Y71F9AL.17.2
2895329
2900860
-
Intergenic
6827
chrI
2894828
2894840
ACCCCC
12
-
2
TGGGGG
Y71F9AL.17.2
2895329
2900860
-
Intergenic
6020
chrI
2896124
2896136
AATCAC
12
-
2
TGTGAT
Y71F9AL.17.2
2895329
2900860
-
Exon
4724
chrI
2896553
2896565
AGCTCC
12
-
2
AGCTGG
Y71F9AL.17.2
2895329
2900860
-
Exon
4295
chrI
2896673
2896685
AAGGAG
12
-
2
TCCTTC
Y71F9AL.17.2
2895329
2900860
-
Exon
4175
chrI
2896684
2896696
AACATC
12
+
2
CATCAA
Y71F9AL.17.2
2895329
2900860
-
Exon
4164
chrI
2896835
2896848
AGC
13
+
4
GCA
Y71F9AL.17.2
2895329
2900860
-
Exon
4012
chrI
2896963
2896975
ACC
12
-
4
TGG
Y71F9AL.17.2
2895329
2900860
-
Exon
3885
chrI
2901621
2901633
AAATTT
12
+
2
AAATTT
Y71F9AL.5
2901325
2903006
+
Intron
296
chrI
2903522
2903535
C
13
+
13
C
Y71F9AL.4
2903596
2907751
+
Intergenic
-61
chrI
2903867
2903880
AAGGAG
13
+
2
GGAGAA
Y71F9AL.4
2903596
2907751
+
Exon
271
chrI
2904553
2904567
A
14
-
14
T
Y71F9AL.4
2903596
2907751
+
Intron
957
chrI
2905129
2905141
ATC
12
-
4
GAT
Y71F9AL.4
2903596
2907751
+
Exon
1533
chrI
2905222
2905235
AAAGAG
13
+
2
GAAAGA
Y71F9AL.4
2903596
2907751
+
Exon
1626
chrI
2905366
2905387
AAAT
21
+
5
TAAA
Y71F9AL.4
2903596
2907751
+
Intron
1770
chrI
2906754
2906766
AATT
12
+
3
AATT
Y71F9AL.4
2903596
2907751
+
Intron
3158