Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3976 to 4000 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
2934598
2934610
A
12
+
12
A
Y71F9AM.4a
2931461
2947152
+
Intron
3137
chrI
2934822
2934835
AAAATT
13
+
2
AAAATT
Y71F9AM.4a
2931461
2947152
+
Intron
3361
chrI
2934987
2934999
AAAATT
12
+
2
AAAATT
Y71F9AM.4a
2931461
2947152
+
Intron
3526
chrI
2935070
2935083
AAATTT
13
+
2
TAAATT
Y71F9AM.4a
2931461
2947152
+
Intron
3609
chrI
2937201
2937213
AAAATT
12
-
2
TAATTT
Y71F9AM.4b
2935623
2944610
+
Intron
1578
chrI
2937224
2937239
AAAATT
15
-
2
TAATTT
Y71F9AM.4b
2935623
2944610
+
Intron
1601
chrI
2939868
2939880
AGGC
12
-
3
CTGC
Y71F9AM.4b
2935623
2944610
+
Intron
4245
chrI
2940418
2940433
AAAT
15
+
3
AAAT
Y71F9AM.4b
2935623
2944610
+
Intron
4795
chrI
2941229
2941241
AAAGT
12
+
2
AAAGT
Y71F9AM.8
2940910
2941583
-
Intron
342
chrI
2945811
2945825
AG
14
-
7
TC
Y71F9AM.4a
2931461
2947152
+
Intron
14350
chrI
2945899
2945911
ACAGTC
12
-
2
ACTGTG
Y71F9AM.4a
2931461
2947152
+
Intron
14438
chrI
2946310
2946322
AAAATG
12
+
2
GAAAAT
Y71F9AM.4a
2931461
2947152
+
Intron
14849
chrI
2947684
2947696
AAACGG
12
+
2
AAACGG
Y71F9AM.4a
2931461
2947152
+
Intergenic
16223
chrI
2951126
2951138
AAATAG
12
-
2
TATTTC
Y71F9AR.1
2949600
2957910
-
Intron
6772
chrI
2951460
2951473
AAAAAT
13
+
2
TAAAAA
Y71F9AR.1
2949600
2957910
-
Intron
6437
chrI
2953829
2953841
AATG
12
+
3
ATGA
Y71F9AR.1
2949600
2957910
-
Exon
4069
chrI
2953932
2953944
ACATCC
12
+
2
CATCCA
Y71F9AR.1
2949600
2957910
-
Exon
3966
chrI
2956377
2956393
AAAAC
16
+
3
ACAAA
Y71F9AR.1
2949600
2957910
-
Intron
1517
chrI
2956738
2956750
AGATCC
12
+
2
CCAGAT
Y71F9AR.1
2949600
2957910
-
Intron
1160
chrI
2957456
2957470
AAAAG
14
+
2
AAAAG
Y71F9AR.1
2949600
2957910
-
Intron
440
chrI
2958728
2958741
C
13
-
13
G
Y71F9AR.1
2949600
2957910
-
Intergenic
-818
chrI
2960340
2960352
A
12
-
12
T
Y71F9AR.1
2949600
2957910
-
Intergenic
-2430
chrI
2961706
2961722
AAAAT
16
-
3
ATTTT
Y71F9AR.1
2949600
2957910
-
Intergenic
-3796
chrI
2961801
2961813
AAAAAT
12
-
2
TTTTTA
Y71F9AR.1
2949600
2957910
-
Intergenic
-3891
chrI
2962015
2962029
AAAAAG
14
+
2
AGAAAA
Y71F9AR.1
2949600
2957910
-
Intergenic
-4105