Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4001 to 4025 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
2963448
2963464
AGC
16
-
5
GCT
Y71F9AR.7
2967616
2967740
+
Intergenic
-4152
chrI
2964274
2964286
AACTAT
12
+
2
CTATAA
Y71F9AR.7
2967616
2967740
+
Intergenic
-3330
chrI
2964566
2964578
AAGGGT
12
+
2
AAGGGT
Y71F9AR.7
2967616
2967740
+
Intergenic
-3038
chrI
2964639
2964654
AAT
15
+
5
TAA
Y71F9AR.7
2967616
2967740
+
Intergenic
-2962
chrI
2965021
2965034
AAAATT
13
+
2
AATTAA
Y71F9AR.7
2967616
2967740
+
Intergenic
-2582
chrI
2965954
2965966
AAATC
12
-
2
TTGAT
Y71F9AR.7
2967616
2967740
+
Intergenic
-1650
chrI
2966779
2966796
AAGCCT
17
-
2
AGGCTT
Y71F9AR.7
2967616
2967740
+
Intergenic
-820
chrI
2966834
2966846
AAGCCT
12
-
2
GGCTTA
Y71F9AR.7
2967616
2967740
+
Intergenic
-770
chrI
2966860
2966875
AAGCCT
15
-
2
CTTAGG
Y71F9AR.7
2967616
2967740
+
Intergenic
-741
chrI
2966879
2966897
AAGCCT
18
-
3
TTAGGC
Y71F9AR.7
2967616
2967740
+
Intergenic
-719
chrI
2966922
2966938
AAGCCT
16
-
2
TAGGCT
Y71F9AR.7
2967616
2967740
+
Intergenic
-678
chrI
2966939
2967009
AAGTCT
70
-
11
TTAGAC
Y71F9AR.7
2967616
2967740
+
Intergenic
-607
chrI
2967004
2967024
AAGCCT
20
-
3
CTTAGG
Y71F9AR.7
2967616
2967740
+
Intergenic
-592
chrI
2967030
2967042
AAGCCT
12
-
2
TAGGCT
Y71F9AR.7
2967616
2967740
+
Intergenic
-574
chrI
2967048
2967060
AAGCCT
12
-
2
TAGGCT
Y71F9AR.7
2967616
2967740
+
Intergenic
-556
chrI
2967066
2967078
AAGCCT
12
-
2
TAGGCT
Y71F9AR.7
2967616
2967740
+
Intergenic
-538
chrI
2967084
2967096
AAGCCT
12
-
2
TAGGCT
Y71F9AR.7
2967616
2967740
+
Intergenic
-520
chrI
2967102
2967114
AAGCCT
12
-
2
TAGGCT
Y71F9AR.7
2967616
2967740
+
Intergenic
-502
chrI
2967154
2967173
AAGCCT
19
-
3
CTTAGG
Y71F9AR.7
2967616
2967740
+
Intergenic
-443
chrI
2967223
2967236
AAGCCT
13
-
2
AGGCTT
Y71F9AR.7
2967616
2967740
+
Intergenic
-380
chrI
2967252
2967264
AAGCCT
12
-
2
TAGGCT
Y71F9AR.7
2967616
2967740
+
Intergenic
-352
chrI
2967276
2967288
AAGCCT
12
-
2
TAGGCT
Y71F9AR.7
2967616
2967740
+
Intergenic
-328
chrI
2967283
2967296
AGCCTG
13
-
2
AGGCTC
Y71F9AR.7
2967616
2967740
+
Intergenic
-320
chrI
2967316
2967328
AAGCCT
12
-
2
CTTAGG
Y71F9AR.7
2967616
2967740
+
Intergenic
-288
chrI
2967362
2967374
AAGCCT
12
-
2
GCTTAG
Y71F9AR.7
2967616
2967740
+
Intergenic
-242