Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4026 to 4050 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
2969363
2969377
AGGC
14
+
3
AGGC
Y71F9AR.7
2967616
2967740
+
Intergenic
1747
chrI
2969428
2969440
AGAGC
12
+
2
GAGCA
Y71F9AR.7
2967616
2967740
+
Intergenic
1812
chrI
2971864
2971876
AACATG
12
-
2
ATGTTC
Y71F9AR.8
2973510
2973591
-
Intergenic
1715
chrI
2972085
2972099
AAATTG
14
+
2
TTGAAA
Y71F9AR.8
2973510
2973591
-
Intergenic
1492
chrI
2972470
2972482
AGGC
12
+
3
AGGC
Y71F9AR.8
2973510
2973591
-
Intergenic
1109
chrI
2973747
2973762
C
15
-
15
G
Y71F9AR.8
2973510
2973591
-
Intergenic
-156
chrI
2973905
2973918
ACCT
13
-
3
GTAG
Y71F9AR.8
2973510
2973591
-
Intergenic
-314
chrI
2974321
2974333
AAATTT
12
+
2
TTTAAA
Y71F9AR.5
2974917
2974970
+
Intergenic
-584
chrI
2975314
2975326
AAATTG
12
+
2
AAATTG
Y71F9AR.5
2974917
2974970
+
Intergenic
397
chrI
2975473
2975485
AACCAC
12
-
2
GTTGTG
Y71F9AR.5
2974917
2974970
+
Intergenic
556
chrI
2975652
2975666
AAGT
14
-
3
TTAC
Y71F9AR.5
2974917
2974970
+
Intergenic
735
chrI
2976078
2976093
AAATT
15
+
3
TAAAT
Y71F9AR.5
2974917
2974970
+
Intergenic
1161
chrI
2976402
2976415
ACCG
13
+
3
ACCG
Y71F9AR.5
2974917
2974970
+
Intergenic
1485
chrI
2978104
2978116
AAAATG
12
+
2
GAAAAT
Y71F9AR.5
2974917
2974970
+
Intergenic
3187
chrI
2978265
2978277
AACT
12
-
3
AGTT
Y71F9AR.4
2981531
2983076
-
Intergenic
4799
chrI
2978546
2978565
AG
19
-
9
TC
Y71F9AR.4
2981531
2983076
-
Intergenic
4511
chrI
2978983
2978995
AATGTC
12
-
2
GACATT
Y71F9AR.4
2981531
2983076
-
Intergenic
4081
chrI
2980357
2980371
C
14
+
14
C
Y71F9AR.4
2981531
2983076
-
Intergenic
2705
chrI
2980731
2980743
AG
12
+
6
GA
Y71F9AR.4
2981531
2983076
-
Intergenic
2333
chrI
2982901
2982913
AAAATT
12
-
2
TTTTAA
Y71F9AR.4
2981531
2983076
-
Intron
163
chrI
2983165
2983177
ACAGC
12
+
2
CACAG
Y71F9AR.2
2983213
2985167
-
Intergenic
1990
chrI
2985018
2985030
A
12
+
12
A
Y71F9AR.2
2983213
2985167
-
Intron
137
chrI
2985249
2985267
ACAGAG
18
-
3
GTCTCT
Y71F9AR.2
2983213
2985167
-
Intergenic
-82
chrI
2985266
2985283
ACAGAG
17
-
2
TCTCTG
Y71F9AR.2
2983213
2985167
-
Intergenic
-99
chrI
2985278
2985318
AG
40
-
20
TC
Y71F9AR.2
2983213
2985167
-
Intergenic
-111