Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5976 to 6000 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
4518984
4518997
AGGC
13
+
3
GCAG
Y119C1B.6
4517260
4518491
-
Intergenic
-493
chrI
4519173
4519185
AAATGC
12
-
2
TTTGCA
Y119C1B.6
4517260
4518491
-
Intergenic
-682
chrI
4521719
4521731
AAACTG
12
+
2
AACTGA
Y119C1B.12
4520070
4522768
+
Exon
1649
chrI
4522623
4522635
AAATAC
12
-
2
TGTATT
Y119C1B.12
4520070
4522768
+
Exon
2553
chrI
4525437
4525449
AACTCC
12
+
2
CTCCAA
Y119C1B.8a
4526232
4534798
-
Intergenic
9349
chrI
4525952
4525966
A
14
+
14
A
Y119C1B.8a
4526232
4534798
-
Intergenic
8832
chrI
4526086
4526100
AG
14
+
7
AG
Y119C1B.8a
4526232
4534798
-
Intergenic
8698
chrI
4526206
4526246
AT
40
+
20
AT
Y119C1B.8a
4526232
4534798
-
Exon
8552
chrI
4526407
4526419
AAATTC
12
+
2
TCAAAT
Y119C1B.8a
4526232
4534798
-
Exon
8379
chrI
4528488
4528500
AAAATT
12
+
2
AAAATT
Y119C1B.8a
4526232
4534798
-
Intron
6298
chrI
4528886
4528899
ACACAG
13
+
2
AGACAC
Y119C1B.8a
4526232
4534798
-
Intron
5899
chrI
4528894
4528909
AC
15
+
7
AC
Y119C1B.8a
4526232
4534798
-
Intron
5889
chrI
4529377
4529390
AAAACC
13
-
2
TGGTTT
Y119C1B.8a
4526232
4534798
-
Intron
5408
chrI
4530465
4530477
AAATAC
12
-
2
TATTTG
Y119C1B.8a
4526232
4534798
-
Intron
4321
chrI
4532297
4532310
AAAATT
13
+
2
TTAAAA
Y119C1B.8a
4526232
4534798
-
Intron
2488
chrI
4534534
4534546
AAACAT
12
-
2
ATGTTT
Y119C1B.8a
4526232
4534798
-
Exon
252
chrI
4535260
4535272
AAATC
12
-
2
TTGAT
Y119C1B.8a
4526232
4534798
-
Intergenic
-462
chrI
4536063
4536077
AG
14
+
7
AG
Y119C1B.8a
4526232
4534798
-
Intergenic
-1265
chrI
4536209
4536229
AG
20
+
10
AG
Y119C1B.9
4537449
4539725
-
Intergenic
3496
chrI
4538439
4538451
ACGGCC
12
-
2
TGGCCG
Y119C1B.9
4537449
4539725
-
Intron
1274
chrI
4540054
4540066
AAATTG
12
-
2
TCAATT
Y119C1B.13
4539889
4540026
-
Intergenic
-28
chrI
4548525
4548633
AAAAAT
108
-
18
ATTTTT
Y119C1B.3.1
4549695
4552758
+
Intergenic
-1062
chrI
4548634
4548655
AAAAAT
21
-
3
TTTTTA
Y119C1B.3.1
4549695
4552758
+
Intergenic
-1040
chrI
4548658
4548684
AAAAAT
26
-
4
TTTTTA
Y119C1B.3.1
4549695
4552758
+
Intergenic
-1011
chrI
4548687
4548716
AAAAAT
29
-
4
ATTTTT
Y119C1B.3.1
4549695
4552758
+
Intergenic
-979