Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6001 to 6025 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
4548707
4548719
AAAAT
12
-
2
TTTTA
Y119C1B.3.1
4549695
4552758
+
Intergenic
-976
chrI
4548717
4548743
AAAT
26
-
6
TTAT
Y119C1B.3.1
4549695
4552758
+
Intergenic
-952
chrI
4548741
4548762
AAAATT
21
-
3
TTTTAA
Y119C1B.3.1
4549695
4552758
+
Intergenic
-933
chrI
4548763
4548786
AAAATT
23
-
3
AATTTT
Y119C1B.3.1
4549695
4552758
+
Intergenic
-909
chrI
4548787
4548804
AAAATT
17
-
2
AATTTT
Y119C1B.3.1
4549695
4552758
+
Intergenic
-891
chrI
4548807
4548835
AAAAAT
28
-
4
TTTTAT
Y119C1B.3.1
4549695
4552758
+
Intergenic
-860
chrI
4548842
4548859
AAAAAT
17
-
2
TTTTTA
Y119C1B.3.1
4549695
4552758
+
Intergenic
-836
chrI
4549901
4549913
AGCT
12
+
3
CTAG
Y119C1B.3.1
4549695
4552758
+
Intron
206
chrI
4550187
4550206
AAGCCT
19
+
3
CTAAGC
Y119C1B.3.1
4549695
4552758
+
Intron
492
chrI
4550349
4550366
AAAATT
17
-
2
ATTTTA
Y119C1B.3.1
4549695
4552758
+
Intron
654
chrI
4551844
4551858
AAG
14
-
4
TCT
Y119C1B.3.2
4550401
4552758
+
Exon
1443
chrI
4554009
4554021
AAAAG
12
+
2
GAAAA
Y119C1B.1
4554126
4555203
+
Intergenic
-105
chrI
4557697
4557709
AACAAG
12
+
2
AAGAAC
D1007.15
4557664
4563694
+
Exon
33
chrI
4557822
4557835
AAAAT
13
-
2
TTTAT
D1007.15
4557664
4563694
+
Intron
158
chrI
4558045
4558057
AAAAAC
12
-
2
GTTTTT
D1007.15
4557664
4563694
+
Intron
381
chrI
4558061
4558073
AGCTAT
12
+
2
TAGCTA
D1007.15
4557664
4563694
+
Intron
397
chrI
4564453
4564466
AAACTT
13
+
2
TAAACT
D1007.14
4564035
4565976
+
Intron
418
chrI
4564696
4564708
AAAATT
12
+
2
AAAATT
D1007.14
4564035
4565976
+
Intron
661
chrI
4565233
4565258
AAT
25
+
8
TAA
D1007.14
4564035
4565976
+
Exon
1198
chrI
4565502
4565514
AACTAC
12
+
2
CAACTA
D1007.14
4564035
4565976
+
Exon
1467
chrI
4565657
4565669
AAAAAC
12
+
2
AACAAA
D1007.14
4564035
4565976
+
Exon
1622
chrI
4565672
4565684
AAAC
12
+
3
ACAA
D1007.14
4564035
4565976
+
Exon
1637
chrI
4566035
4566047
A
12
-
12
T
D1007.14
4564035
4565976
+
Intergenic
2000
chrI
4567692
4567713
AAT
21
+
7
AAT
D1007.13b
4566495
4568385
+
Intron
1197
chrI
4568281
4568294
AAAAGG
13
+
2
GGAAAA
D1007.13a
4567884
4568385
+
Exon
397