Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 1626 to 1650 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
1126722
1126744
AAGCCT
22
+
3
CCTAAG
ZK993.4
1126975
1127057
+
Intergenic
-231
chrI
1126754
1126772
AAGCCT
18
+
3
AAGCCT
ZK993.4
1126975
1127057
+
Intergenic
-203
chrI
1126834
1126852
AAGCCT
18
+
3
GCCTAA
ZK993.4
1126975
1127057
+
Intergenic
-123
chrI
1126853
1126888
AAGCCT
35
+
5
CCTAAG
ZK993.4
1126975
1127057
+
Intergenic
-87
chrI
1129043
1129055
AAAATC
12
+
2
AAAATC
ZK993.1a
1128324
1131737
+
Intron
719
chrI
1133433
1133449
AAGATG
16
-
2
CTTCAT
ZK993.1a
1128324
1131737
+
Intergenic
5109
chrI
1134171
1134183
AAAATG
12
-
2
ATTTTC
Y48G8AL.10a
1136371
1154386
-
Intergenic
20203
chrI
1134525
1134537
AAAATG
12
-
2
ATTTTC
Y48G8AL.10a
1136371
1154386
-
Intergenic
19849
chrI
1134879
1134891
AAAATG
12
-
2
ATTTTC
Y48G8AL.10a
1136371
1154386
-
Intergenic
19495
chrI
1137581
1137595
A
14
-
14
T
Y48G8AL.10e
1136374
1138066
-
Intron
471
chrI
1137606
1137622
AAACT
16
+
3
AAACT
Y48G8AL.10e
1136374
1138066
-
Intron
444
chrI
1138797
1138809
ACG
12
+
4
CGA
Y48G8AL.10d
1136374
1147587
-
Intron
8778
chrI
1140479
1140491
AAAATT
12
-
2
TTTAAT
Y48G8AL.10d
1136374
1147587
-
Intron
7096
chrI
1142434
1142450
A
16
+
16
A
Y48G8AL.10d
1136374
1147587
-
Intron
5137
chrI
1142549
1142561
AAATT
12
-
2
TAATT
Y48G8AL.10d
1136374
1147587
-
Intron
5026
chrI
1145951
1145963
AAAATT
12
-
2
TTAATT
Y48G8AL.10d
1136374
1147587
-
Intron
1624
chrI
1146391
1146403
AAATTT
12
+
2
AAATTT
Y48G8AL.10d
1136374
1147587
-
Intron
1184
chrI
1148164
1148176
AACTTC
12
+
2
AACTTC
Y48G8AL.10c
1136374
1150575
-
Intron
2399
chrI
1149879
1149891
AAAT
12
+
3
AAAT
Y48G8AL.10d
1136374
1147587
-
Intergenic
-2292
chrI
1150702
1150719
A
17
+
17
A
Y48G8AL.10c
1136374
1150575
-
Intergenic
-127
chrI
1151045
1151057
AAAAAT
12
+
2
AAAAAT
Y48G8AL.10b
1136374
1152259
-
Intron
1202
chrI
1152995
1153008
ACCTCG
13
-
2
GGTCGA
Y48G8AL.10a
1136371
1154386
-
Exon
1378
chrI
1154245
1154262
AAT
17
-
5
ATT
Y48G8AL.10a
1136371
1154386
-
Exon
124
chrI
1154511
1154524
AAAT
13
+
3
AATA
Y48G8AL.14
1154511
1156020
-
Exon
1496
chrI
1158389
1158404
AAAAAT
15
-
2
TTTTTA
Y48G8AL.7
1157571
1162939
+
Intron
818