Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 1651 to 1675 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
1158722
1158734
AAATAC
12
-
2
TATTTG
Y48G8AL.7
1157571
1162939
+
Intron
1151
chrI
1161665
1161677
AAGAT
12
+
2
AAGAT
Y48G8AL.7
1157571
1162939
+
Intron
4094
chrI
1162179
1162191
AATT
12
+
3
AATT
Y48G8AL.7
1157571
1162939
+
Intron
4608
chrI
1163394
1163406
AAAT
12
-
3
ATTT
Y48G8AL.11c
1162897
1164701
-
Intron
1295
chrI
1163399
1163411
AAAAT
12
-
2
TTTAT
Y48G8AL.11c
1162897
1164701
-
Intron
1290
chrI
1163531
1163543
AATT
12
+
3
AATT
Y48G8AL.11c
1162897
1164701
-
Intron
1158
chrI
1163692
1163706
AAAAAT
14
+
2
AAAAAT
Y48G8AL.11c
1162897
1164701
-
Intron
995
chrI
1164698
1164710
AATCGC
12
-
2
GCGATT
Y48G8AL.11c
1162897
1164701
-
Exon
3
chrI
1165474
1165487
AC
13
-
6
GT
Y48G8AL.11b
1162880
1175861
-
Intron
10374
chrI
1166741
1166753
AATTCC
12
-
2
TTGGAA
Y48G8AL.11b
1162880
1175861
-
Intron
9108
chrI
1166847
1166859
A
12
-
12
T
Y48G8AL.11b
1162880
1175861
-
Intron
9002
chrI
1167369
1167381
A
12
+
12
A
Y48G8AL.11b
1162880
1175861
-
Intron
8480
chrI
1168167
1168179
AAAAAT
12
+
2
AAAAAT
Y48G8AL.11b
1162880
1175861
-
Intron
7682
chrI
1169410
1169422
AACGGG
12
-
2
TCCCGT
Y48G8AL.11b
1162880
1175861
-
Intron
6439
chrI
1169450
1169463
AACGGG
13
-
2
TTCCCG
Y48G8AL.11b
1162880
1175861
-
Intron
6398
chrI
1169491
1169504
AACGGG
13
-
2
TTCCCG
Y48G8AL.11b
1162880
1175861
-
Intron
6357
chrI
1170008
1170021
AAAAAT
13
-
2
TATTTT
Y48G8AL.11b
1162880
1175861
-
Intron
5840
chrI
1170251
1170263
A
12
-
12
T
Y48G8AL.11b
1162880
1175861
-
Intron
5598
chrI
1170746
1170758
AATGAC
12
-
2
CATTGT
Y48G8AL.11b
1162880
1175861
-
Exon
5103
chrI
1172069
1172082
AAAAAT
13
-
2
TATTTT
Y48G8AL.11b
1162880
1175861
-
Intron
3779
chrI
1172546
1172558
AAAAT
12
+
2
AAATA
Y48G8AL.11b
1162880
1175861
-
Intron
3303
chrI
1172971
1172984
AAAAAT
13
+
2
AAAAAT
Y48G8AL.11b
1162880
1175861
-
Intron
2877
chrI
1174144
1174157
AAAATT
13
+
2
TAAAAT
Y48G8AL.11b
1162880
1175861
-
Intron
1704
chrI
1177980
1177994
AGC
14
+
4
AGC
Y48G8AL.6.3
1176473
1189651
+
Exon
1507
chrI
1178960
1178983
AT
23
+
11
TA
Y48G8AL.6.3
1176473
1189651
+
Intron
2487