Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 1701 to 1725 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
1208177
1208189
AAATTT
12
+
2
AAATTT
Y48G8AL.5d
1207344
1211005
+
Intron
833
chrI
1208829
1208843
A
14
+
14
A
Y48G8AL.5d
1207344
1211005
+
Intron
1485
chrI
1210570
1210582
AAAATT
12
-
2
AATTTT
Y48G8AL.5d
1207344
1211005
+
Intron
3226
chrI
1212082
1212095
AAAATT
13
+
2
TAAAAT
Y48G8AL.1a.2
1211492
1254669
+
Intron
590
chrI
1214363
1214375
AAAAAT
12
+
2
AAAAAT
Y48G8AL.1a.2
1211492
1254669
+
Intron
2871
chrI
1215092
1215104
AGCTCC
12
-
2
TGGAGC
Y48G8AL.16
1215045
1217263
-
Exon
2159
chrI
1218559
1218571
AGCTCC
12
-
2
TGGAGC
Y48G8AL.12
1218435
1219002
-
Exon
431
chrI
1218580
1218592
ACC
12
-
4
TGG
Y48G8AL.12
1218435
1219002
-
Exon
410
chrI
1218634
1218649
ACC
15
-
5
TGG
Y48G8AL.12
1218435
1219002
-
Exon
353
chrI
1219407
1219423
ATC
16
-
5
TGA
Y48G8AL.1a.2
1211492
1254669
+
Intron
7915
chrI
1220811
1220827
A
16
-
16
T
Y48G8AL.1a.2
1211492
1254669
+
Intron
9319
chrI
1221868
1221880
AAAATT
12
-
2
AATTTT
Y48G8AL.1a.2
1211492
1254669
+
Intron
10376
chrI
1222417
1222429
AAAATT
12
+
2
AAAATT
Y48G8AL.1a.2
1211492
1254669
+
Intron
10925
chrI
1223195
1223209
AAATTT
14
+
2
TTTAAA
Y48G8AL.13a.3
1223957
1226812
-
Intergenic
3603
chrI
1224002
1224014
AC
12
+
6
CA
Y48G8AL.13b.3
1223959
1225544
-
Exon
1530
chrI
1224068
1224080
AAAAGG
12
+
2
GAAAAG
Y48G8AL.13b.3
1223959
1225544
-
Exon
1464
chrI
1228071
1228090
AC
19
+
9
AC
Y48G8AL.13a.1
1223959
1229282
-
Intron
1192
chrI
1228462
1228474
AAATTG
12
+
2
GAAATT
Y48G8AL.13a.2
1223959
1227858
-
Intergenic
-604
chrI
1229438
1229451
AG
13
+
6
GA
Y48G8AL.13a.1
1223959
1229282
-
Intergenic
-156
chrI
1229540
1229552
AAGGAC
12
+
2
GACAAG
Y48G8AL.13a.1
1223959
1229282
-
Intergenic
-258
chrI
1230143
1230157
AATT
14
+
3
AATT
Y48G8AL.13a.1
1223959
1229282
-
Intergenic
-861
chrI
1230358
1230374
AGCTC
16
+
3
CAGCT
Y48G8AL.13a.1
1223959
1229282
-
Intergenic
-1076
chrI
1230910
1230923
AG
13
+
6
AG
Y48G8AL.1b
1232393
1254669
+
Intergenic
-1470
chrI
1231068
1231086
AT
18
+
9
AT
Y48G8AL.1b
1232393
1254669
+
Intergenic
-1307
chrI
1231362
1231374
AACTTG
12
-
2
TTCAAG
Y48G8AL.1b
1232393
1254669
+
Intergenic
-1019