Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 2526 to 2550 repeats of 170418
Go To:
<<
<
100
101
102
103
104
>
>>
Clear Filters
Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
1735706
1735718
AAAATC
12
+
2
TCAAAA
AT1G05790
1732802
1737583
+
Genic
2904
NC_003070.9
1735835
1735847
AAAGAG
12
-
2
CTTTCT
AT1G05790
1732802
1737583
+
Genic
3033
NC_003070.9
1736333
1736345
AAAAG
12
-
2
TTCTT
AT1G05790
1732802
1737583
+
Genic
3531
NC_003070.9
1736376
1736388
ACATAT
12
-
2
TATATG
AT1G05790
1732802
1737583
+
Genic
3574
NC_003070.9
1737492
1737504
A
12
-
12
T
AT1G05790
1732802
1737583
+
Genic
4690
NC_003070.9
1739091
1739103
AACTAT
12
-
2
GTTATA
AT1G05790
1732802
1737583
+
Intergenic
6289
NC_003070.9
1739185
1739200
A
15
+
15
A
AT1G05790
1732802
1737583
+
Intergenic
6383
NC_003070.9
1739624
1739641
AT
17
+
8
AT
DGL
1741204
1742619
+
Intergenic
-1563
NC_003070.9
1739798
1739810
AAAAAG
12
-
2
TTTTTC
DGL
1741204
1742619
+
Intergenic
-1394
NC_003070.9
1739895
1739909
AAAAT
14
-
2
TTTTA
DGL
1741204
1742619
+
Intergenic
-1295
NC_003070.9
1740272
1740285
AAAAG
13
-
2
TTTCT
DGL
1741204
1742619
+
Intergenic
-919
NC_003070.9
1740712
1740726
AAAAAT
14
+
2
AAAAAT
DGL
1741204
1742619
+
Intergenic
-478
NC_003070.9
1741381
1741398
AAG
17
-
5
CTT
DGL
1741204
1742619
+
Exon
177
NC_003070.9
1741696
1741708
AACCTC
12
+
2
TCAACC
DGL
1741204
1742619
+
Exon
492
NC_003070.9
1741944
1741956
AGAGCG
12
+
2
GAGAGC
DGL
1741204
1742619
+
Exon
740
NC_003070.9
1743123
1743137
AAATAT
14
+
2
TATAAA
DGL
1741204
1742619
+
Intergenic
1919
NC_003070.9
1743224
1743242
A
18
+
18
A
DGL
1741204
1742619
+
Intergenic
2020
NC_003070.9
1743497
1743510
A
13
-
13
T
DGL
1741204
1742619
+
Intergenic
2293
NC_003070.9
1743756
1743771
AAAG
15
+
3
AAAG
AT1G05805
1744444
1747734
+
Intergenic
-673
NC_003070.9
1743820
1743832
AAAAAT
12
+
2
AATAAA
AT1G05805
1744444
1747734
+
Intergenic
-612
NC_003070.9
1743999
1744012
AAAAT
13
-
2
TTTAT
AT1G05805
1744444
1747734
+
Intergenic
-432
NC_003070.9
1745129
1745141
AACAAT
12
+
2
CAATAA
AT1G05805
1744444
1747734
+
Genic
685
NC_003070.9
1745136
1745149
AAT
13
+
4
AAT
AT1G05805
1744444
1747734
+
Genic
692
NC_003070.9
1745803
1745816
AAAT
13
-
3
ATTT
AT1G05805
1744444
1747734
+
Genic
1359
NC_003070.9
1746136
1746150
AATGTG
14
+
2
ATGTGA
AT1G05805
1744444
1747734
+
Genic
1692