Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3701 to 3725 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
2612189
2612201
AAT
12
+
4
ATA
WIP3
2609996
2613377
-
Intron
1176
NC_003070.9
2612459
2612471
AAAAAG
12
-
2
TTTCTT
WIP3
2609996
2613377
-
Intron
906
NC_003070.9
2613211
2613229
AG
18
-
9
CT
WIP3
2609996
2613377
-
Exon
148
NC_003070.9
2614919
2614931
AACCCT
12
+
2
AACCCT
NVL
2614774
2618823
+
Intron
145
NC_003070.9
2615151
2615163
AAC
12
+
4
AAC
NVL
2614774
2618823
+
Exon
377
NC_003070.9
2617403
2617415
AAATTC
12
-
2
TTTGAA
NVL
2614774
2618823
+
Intron
2629
NC_003070.9
2617433
2617446
AAACTG
13
+
2
CTGAAA
NVL
2614774
2618823
+
Intron
2659
NC_003070.9
2618743
2618755
AATCTC
12
-
2
AGATTG
NVL
2614774
2618823
+
Exon
3969
NC_003070.9
2619051
2619066
AAAAT
15
-
3
ATTTT
AT1G08310
2618647
2620452
+
Genic
404
NC_003070.9
2620357
2620371
AATC
14
-
3
TTGA
AT1G08315
2620335
2621545
-
Genic
1174
NC_003070.9
2621516
2621530
AAAGAT
14
-
2
TTTATC
AT1G08315
2620335
2621545
-
Genic
15
NC_003070.9
2621804
2621816
AACAAG
12
-
2
TCTTGT
TGA9
2621860
2628594
-
Intergenic
6778
NC_003070.9
2621811
2621823
AAGTAC
12
-
2
CTTGTA
TGA9
2621860
2628594
-
Intergenic
6771
NC_003070.9
2622541
2622553
AATTAT
12
+
2
ATAATT
TGA9
2621860
2628594
-
Intron
6041
NC_003070.9
2622676
2622688
AAAAC
12
+
2
CAAAA
TGA9
2621860
2628594
-
Intron
5906
NC_003070.9
2623193
2623207
A
14
+
14
A
TGA9
2621860
2628594
-
Intron
5387
NC_003070.9
2624604
2624619
AAAAAC
15
+
2
AAAAAC
TGA9
2621860
2628594
-
Intron
3975
NC_003070.9
2624859
2624872
ATC
13
-
4
ATG
TGA9
2621860
2628594
-
Intron
3722
NC_003070.9
2625355
2625367
AAAAAC
12
-
2
TGTTTT
TGA9
2621860
2628594
-
Intron
3227
NC_003070.9
2625385
2625397
ACATAG
12
+
2
GACATA
TGA9
2621860
2628594
-
Intron
3197
NC_003070.9
2625437
2625449
AG
12
+
6
GA
TGA9
2621860
2628594
-
Intron
3145
NC_003070.9
2625562
2625598
ATC
36
-
12
TGA
TGA9
2621860
2628594
-
Intron
2996
NC_003070.9
2626248
2626265
AGG
17
-
5
CTC
TGA9
2621860
2628594
-
Exon
2329
NC_003070.9
2626556
2626568
AAGAG
12
+
2
AAGAG
TGA9
2621860
2628594
-
Intron
2026
NC_003070.9
2626677
2626689
AAACTG
12
-
2
CAGTTT
TGA9
2621860
2628594
-
Intron
1905
