Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4276 to 4300 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
3059782
3059794
A
12
-
12
T
AT1G09480
3057975
3060757
+
Genic
1807
NC_003070.9
3060062
3060075
AAAAAG
13
-
2
TTTTCT
AT1G09480
3057975
3060757
+
Genic
2087
NC_003070.9
3061023
3061035
AAGGAT
12
-
2
CCTTAT
AT1G09483
3061170
3061743
-
Intergenic
708
NC_003070.9
3061749
3061761
ACTCAG
12
-
2
GAGTCT
AT1G09483
3061170
3061743
-
Intergenic
-6
NC_003070.9
3062034
3062049
AGCGGC
15
-
2
CGCTGC
AT1G09483
3061170
3061743
-
Intergenic
-291
NC_003070.9
3063485
3063497
AAAATT
12
-
2
TTTTAA
AT1G09490
3063936
3065949
+
Intergenic
-439
NC_003070.9
3063646
3063658
AAATAT
12
+
2
TAAATA
AT1G09490
3063936
3065949
+
Intergenic
-278
NC_003070.9
3063910
3063924
A
14
+
14
A
AT1G09490
3063936
3065949
+
Intergenic
-12
NC_003070.9
3064301
3064313
AG
12
-
6
CT
AT1G09490
3063936
3065949
+
Genic
365
NC_003070.9
3064463
3064477
A
14
-
14
T
AT1G09490
3063936
3065949
+
Genic
527
NC_003070.9
3065845
3065857
AAAAAT
12
-
2
TATTTT
AT1G09490
3063936
3065949
+
Genic
1909
NC_003070.9
3066395
3066411
AAAT
16
-
4
TATT
AT1G09500
3066674
3068796
+
Intergenic
-263
NC_003070.9
3068249
3068263
AAAAAG
14
-
2
TTTTCT
AT1G09500
3066674
3068796
+
Genic
1575
NC_003070.9
3068585
3068597
AAACAT
12
-
2
TTATGT
AT1G09500
3066674
3068796
+
Genic
1911
NC_003070.9
3068740
3068752
AAAAAG
12
+
2
AAGAAA
AT1G09500
3066674
3068796
+
Genic
2066
NC_003070.9
3068835
3068847
AAAGTG
12
+
2
AAGTGA
AT1G09500
3066674
3068796
+
Intergenic
2161
NC_003070.9
3069612
3069624
AAC
12
-
4
TGT
AT1G09510
3069357
3070910
+
Genic
255
NC_003070.9
3069778
3069790
AACTGT
12
+
2
TAACTG
AT1G09510
3069357
3070910
+
Genic
421
NC_003070.9
3071173
3071186
AATCAG
13
+
2
GAATCA
AT1G09520
3070915
3072074
-
Genic
888
NC_003070.9
3071327
3071340
ACGACT
13
-
2
TAGTCG
AT1G09520
3070915
3072074
-
Genic
734
NC_003070.9
3071346
3071359
ACT
13
-
4
AGT
AT1G09520
3070915
3072074
-
Genic
715
NC_003070.9
3071678
3071691
AAGGAG
13
+
2
AGAAGG
AT1G09520
3070915
3072074
-
Genic
383
NC_003070.9
3072862
3072875
ATCATG
13
+
2
TGATCA
AT1G09520
3070915
3072074
-
Intergenic
-788
NC_003070.9
3073352
3073369
AAATT
17
+
3
TTAAA
AT1G09520
3070915
3072074
-
Intergenic
-1278
NC_003070.9
3074572
3074584
AATT
12
+
3
TTAA
PIF3
3075768
3079654
+
Intergenic
-1184