Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4376 to 4400 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
3121290
3121302
AACTTG
12
+
2
AACTTG
AT1G09640
3119739
3122542
+
Genic
1551
NC_003070.9
3121527
3121540
AAGAGG
13
+
2
GAAGAG
AT1G09640
3119739
3122542
+
Genic
1788
NC_003070.9
3123827
3123841
AAAGAG
14
-
2
TCTCTT
AT1G09645
3122926
3124667
+
Genic
901
NC_003070.9
3124211
3124223
ACAGCC
12
-
2
TGTGGC
AT1G09645
3122926
3124667
+
Genic
1285
NC_003070.9
3124563
3124575
AAAG
12
-
3
TTTC
AT1G09645
3122926
3124667
+
Genic
1637
NC_003070.9
3124786
3124802
A
16
-
16
T
AT1G09645
3122926
3124667
+
Intergenic
1860
NC_003070.9
3125612
3125625
AAACAT
13
-
2
TATGTT
AT1G09650
3125175
3127284
+
Genic
437
NC_003070.9
3125680
3125692
ATATGC
12
+
2
CATATG
AT1G09650
3125175
3127284
+
Genic
505
NC_003070.9
3126270
3126291
AGG
21
+
7
GGA
AT1G09650
3125175
3127284
+
Genic
1095
NC_003070.9
3126966
3126984
AAG
18
+
6
GAA
AT1G09650
3125175
3127284
+
Genic
1791
NC_003070.9
3127589
3127601
AATCAG
12
+
2
ATCAGA
AT1G09660
3127762
3131094
-
Intergenic
3493
NC_003070.9
3128098
3128113
ACTCGG
15
+
2
CTCGGA
AT1G09660
3127762
3131094
-
Genic
2981
NC_003070.9
3129187
3129200
AAAAGC
13
+
2
AAAGCA
AT1G09660
3127762
3131094
-
Genic
1894
NC_003070.9
3129741
3129753
AATGAT
12
-
2
ATCATT
AT1G09660
3127762
3131094
-
Genic
1341
NC_003070.9
3129781
3129793
AACAT
12
+
2
ACATA
AT1G09660
3127762
3131094
-
Genic
1301
NC_003070.9
3130975
3130988
AAG
13
+
4
GAA
AT1G09660
3127762
3131094
-
Genic
106
NC_003070.9
3132365
3132388
A
23
+
23
A
AT1G04717
3131952
3132215
-
Intergenic
-150
NC_003070.9
3132677
3132690
AAGCAG
13
-
2
TCTGCT
AT1G09665
3133008
3133674
+
Intergenic
-318
NC_003070.9
3133061
3133073
ACGCTC
12
+
2
GCTCAC
AT1G09665
3133008
3133674
+
Genic
53
NC_003070.9
3135598
3135611
AGATG
13
+
2
TGAGA
AT1G09680
3133885
3135976
-
Genic
365
NC_003070.9
3135936
3135948
ACTCTG
12
+
2
GACTCT
AT1G09680
3133885
3135976
-
Genic
28
NC_003070.9
3136536
3136548
AAAGCC
12
-
2
TTGGCT
AT1G09690
3136188
3137684
-
Genic
1136
NC_003070.9
3136566
3136578
AAG
12
-
4
TTC
AT1G09690
3136188
3137684
-
Genic
1106
NC_003070.9
3137471
3137483
AAATG
12
+
2
GAAAT
AT1G09690
3136188
3137684
-
Genic
201
NC_003070.9
3139635
3139647
AAACAG
12
+
2
AAACAG
HYL1
3137649
3140353
-
Intron
706