Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4826 to 4850 repeats of 170418
Go To:
<<
<
192
193
194
195
196
>
>>
Clear Filters
Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
3477988
3478005
AAAAAG
17
+
2
AAAAAG
NAT8
3474858
3478028
-
Exon
23
NC_003070.9
3478249
3478262
AAAAAG
13
+
2
AAAAAG
NAT8
3474858
3478028
-
Intergenic
-221
NC_003070.9
3478490
3478504
AAAT
14
-
3
TTAT
NAT8
3474858
3478028
-
Intergenic
-462
NC_003070.9
3478688
3478700
AGATC
12
-
2
TCTGA
XTH33
3479066
3481041
-
Intergenic
2341
NC_003070.9
3478942
3478956
A
14
-
14
T
XTH33
3479066
3481041
-
Intergenic
2085
NC_003070.9
3479845
3479858
AAAAAC
13
-
2
TTTGTT
XTH33
3479066
3481041
-
Intron
1183
NC_003070.9
3479943
3479955
AAATTC
12
+
2
TTCAAA
XTH33
3479066
3481041
-
Intron
1086
NC_003070.9
3480063
3480078
AAAAGG
15
-
2
CTTTTC
XTH33
3479066
3481041
-
Intron
963
NC_003070.9
3480227
3480241
AAGAG
14
-
2
CTTCT
XTH33
3479066
3481041
-
Exon
800
NC_003070.9
3481024
3481037
ACCTCT
13
-
2
TAGAGG
XTH33
3479066
3481041
-
Exon
4
NC_003070.9
3481320
3481333
AAATC
13
+
2
AATCA
XTH33
3479066
3481041
-
Intergenic
-279
NC_003070.9
3481583
3481595
AC
12
+
6
CA
XTH33
3479066
3481041
-
Intergenic
-542
NC_003070.9
3482550
3482563
AAAC
13
+
3
ACAA
XTH33
3479066
3481041
-
Intergenic
-1509
NC_003070.9
3482568
3482580
ACACCT
12
-
2
GTAGGT
XTH33
3479066
3481041
-
Intergenic
-1527
NC_003070.9
3483136
3483148
AAATG
12
-
2
TCATT
PUB18
3484399
3486965
+
Intergenic
-1251
NC_003070.9
3484131
3484143
AAATGG
12
-
2
TTTCCA
PUB18
3484399
3486965
+
Intergenic
-256
NC_003070.9
3484828
3484840
ATCCGG
12
+
2
CGGATC
PUB18
3484399
3486965
+
Exon
429
NC_003070.9
3485197
3485209
ATCCGG
12
+
2
CCGGAT
PUB18
3484399
3486965
+
Exon
798
NC_003070.9
3485312
3485327
AAG
15
+
5
AGA
PUB18
3484399
3486965
+
Exon
913
NC_003070.9
3486082
3486094
AAGCAG
12
-
2
TCTGCT
PUB18
3484399
3486965
+
Exon
1683
NC_003070.9
3487471
3487485
AAATTC
14
-
2
AATTTG
OTS2
3487386
3491277
+
Exon
85
NC_003070.9
3487982
3487994
A
12
-
12
T
OTS2
3487386
3491277
+
Exon
596
NC_003070.9
3488257
3488269
ACAGAG
12
-
2
CTCTGT
OTS2
3487386
3491277
+
Exon
871
NC_003070.9
3489229
3489241
AAGATG
12
+
2
GATGAA
OTS2
3487386
3491277
+
Exon
1843
NC_003070.9
3491144
3491156
AAATG
12
+
2
AATGA
OTS2
3487386
3491277
+
Exon
3758