Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4901 to 4925 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
3525877
3525890
AAG
13
+
4
AAG
AT1G10650
3523986
3526531
-
Genic
641
NC_003070.9
3526164
3526180
AAG
16
+
5
AGA
AT1G10650
3523986
3526531
-
Genic
351
NC_003070.9
3526250
3526262
AAG
12
+
4
GAA
AT1G10650
3523986
3526531
-
Genic
269
NC_003070.9
3526257
3526272
AAAG
15
+
3
AAGA
AT1G10650
3523986
3526531
-
Genic
259
NC_003070.9
3526274
3526287
AATG
13
+
3
AATG
AT1G10650
3523986
3526531
-
Genic
244
NC_003070.9
3526385
3526397
A
12
-
12
T
AT1G10650
3523986
3526531
-
Genic
134
NC_003070.9
3526560
3526572
AAAAAC
12
-
2
TTTTTG
AT1G10650
3523986
3526531
-
Intergenic
-29
NC_003070.9
3527152
3527164
AATTAT
12
+
2
ATAATT
AT1G10650
3523986
3526531
-
Intergenic
-621
NC_003070.9
3527235
3527272
AT
37
+
18
AT
AT1G10650
3523986
3526531
-
Intergenic
-704
NC_003070.9
3527811
3527823
AAG
12
+
4
AAG
AT1G10650
3523986
3526531
-
Intergenic
-1280
NC_003070.9
3528023
3528036
AAAAAG
13
+
2
GAAAAA
AT1G04813
3529514
3529759
-
Intergenic
1723
NC_003070.9
3528333
3528345
AACCTG
12
+
2
TGAACC
AT1G04813
3529514
3529759
-
Intergenic
1414
NC_003070.9
3528582
3528594
AAACTC
12
-
2
GAGTTT
AT1G04813
3529514
3529759
-
Intergenic
1165
NC_003070.9
3529365
3529377
AACCAC
12
+
2
CCACAA
AT1G04813
3529514
3529759
-
Intergenic
382
NC_003070.9
3530303
3530318
AAAAT
15
+
3
AAAAT
AT1G10657
3530353
3532017
+
Intergenic
-35
NC_003070.9
3530471
3530483
AAATAT
12
-
2
TATTTA
AT1G10657
3530353
3532017
+
Genic
118
NC_003070.9
3530598
3530617
AAG
19
+
6
AAG
AT1G10657
3530353
3532017
+
Genic
245
NC_003070.9
3530673
3530685
AACAC
12
+
2
CACAA
AT1G10657
3530353
3532017
+
Genic
320
NC_003070.9
3532084
3532103
A
19
+
19
A
AT1G10657
3530353
3532017
+
Intergenic
1731
NC_003070.9
3532516
3532528
AAGAGG
12
-
2
TCCTCT
AT1G10660
3532229
3535137
+
Genic
287
NC_003070.9
3534871
3534886
ACCATG
15
-
2
TCATGG
AT1G10660
3532229
3535137
+
Genic
2642
NC_003070.9
3534882
3534904
AAAGTC
22
+
3
GTCAAA
AT1G10660
3532229
3535137
+
Genic
2653
NC_003070.9
3535166
3535178
AACTTC
12
-
2
GTTGAA
AT1G10660
3532229
3535137
+
Intergenic
2937
NC_003070.9
3535749
3535763
AAAATC
14
-
2
TGATTT
ACLA-1
3535288
3538439
+
Exon
461
NC_003070.9
3536797
3536809
AAGTCT
12
-
2
GACTTA
ACLA-1
3535288
3538439
+
Intron
1509