Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6176 to 6200 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4389298
4389310
AAATGG
12
+
2
GGAAAT
AT1G12870
4387129
4389110
-
Intergenic
-188
NC_003070.9
4389407
4389420
AAAACT
13
+
2
CTAAAA
NUDT12
4389678
4391344
+
Intergenic
-258
NC_003070.9
4389431
4389447
A
16
+
16
A
NUDT12
4389678
4391344
+
Intergenic
-231
NC_003070.9
4389685
4389697
AAAT
12
-
3
ATTT
NUDT12
4389678
4391344
+
Exon
7
NC_003070.9
4389979
4389991
AAACAG
12
-
2
TCTGTT
NUDT12
4389678
4391344
+
Exon
301
NC_003070.9
4390135
4390149
AAAAC
14
-
2
TTTTG
NUDT12
4389678
4391344
+
Intron
457
NC_003070.9
4393041
4393053
AAGAGC
12
-
2
TGCTCT
GAPA-2
4392438
4394454
-
Exon
1401
NC_003070.9
4395581
4395594
AACACC
13
+
2
AACACC
ATAN11
4394897
4396291
-
Exon
697
NC_003070.9
4397885
4397897
AAGGAG
12
+
2
GGAGAA
ERF1-2
4396348
4398193
-
Exon
296
NC_003070.9
4398351
4398363
AAAT
12
+
3
AAAT
AT1G12930
4398322
4405669
-
Genic
7306
NC_003070.9
4398539
4398552
AAAAT
13
+
2
AAAAT
AT1G12930
4398322
4405669
-
Genic
7117
NC_003070.9
4398597
4398610
AAATCC
13
-
2
TTTGGA
AT1G12930
4398322
4405669
-
Genic
7059
NC_003070.9
4398830
4398843
AAAC
13
+
3
ACAA
AT1G12930
4398322
4405669
-
Genic
6826
NC_003070.9
4398898
4398910
AAAGAG
12
+
2
AAGAGA
AT1G12930
4398322
4405669
-
Genic
6759
NC_003070.9
4399034
4399046
AAAAAC
12
+
2
AAAACA
AT1G12930
4398322
4405669
-
Genic
6623
NC_003070.9
4400954
4400966
AAAAGC
12
+
2
AGCAAA
AT1G12930
4398322
4405669
-
Genic
4703
NC_003070.9
4401216
4401228
AAATAT
12
+
2
ATATAA
AT1G12930
4398322
4405669
-
Genic
4441
NC_003070.9
4405198
4405210
AATCTG
12
+
2
TCTGAA
AT1G12930
4398322
4405669
-
Genic
459
NC_003070.9
4405529
4405541
AAAGAG
12
-
2
TTCTCT
AT1G12930
4398322
4405669
-
Genic
128
NC_003070.9
4405561
4405579
AAG
18
-
6
TTC
AT1G12930
4398322
4405669
-
Genic
90
NC_003070.9
4405689
4405701
AAATCG
12
-
2
TTCGAT
AT1G12930
4398322
4405669
-
Intergenic
-20
NC_003070.9
4407587
4407599
AATTAT
12
+
2
ATTATA
AT1G12930
4398322
4405669
-
Intergenic
-1918
NC_003070.9
4407924
4407936
AAATAT
12
-
2
ATATTT
AT1G12930
4398322
4405669
-
Intergenic
-2255
NC_003070.9
4409768
4409784
A
16
-
16
T
AT1G12930
4398322
4405669
-
Intergenic
-4099
NC_003070.9
4410147
4410163
AAAT
16
-
4
TTTA
AT1G12930
4398322
4405669
-
Intergenic
-4478
