Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6601 to 6625 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
4675906
4675927
A
21
-
21
T
AT1G13635
4674152
4676484
+
Genic
1754
NC_003070.9
4677594
4677608
AAG
14
-
4
TCT
AT1G13640
4677004
4679862
-
Genic
2254
NC_003070.9
4678381
4678393
AATGTC
12
-
2
CATTGA
AT1G13640
4677004
4679862
-
Genic
1469
NC_003070.9
4679591
4679603
ACCGTC
12
+
2
TCACCG
AT1G13640
4677004
4679862
-
Genic
259
NC_003070.9
4679624
4679637
AGG
13
+
4
GGA
AT1G13640
4677004
4679862
-
Genic
225
NC_003070.9
4680584
4680598
AAGAG
14
+
2
AGAGA
AT1G13650
4680290
4682382
-
Genic
1784
NC_003070.9
4681391
4681403
AAGAC
12
-
2
TCTTG
AT1G13650
4680290
4682382
-
Genic
979
NC_003070.9
4682266
4682278
AAGAT
12
+
2
ATAAG
AT1G13650
4680290
4682382
-
Genic
104
NC_003070.9
4684934
4684946
AAGTGC
12
-
2
CTTGCA
AT1G13650
4680290
4682382
-
Intergenic
-2552
NC_003070.9
4687473
4687486
AAT
13
+
4
ATA
AT1G13670
4688018
4689265
+
Intergenic
-532
NC_003070.9
4687576
4687588
AAACAG
12
-
2
TGTTTC
AT1G13670
4688018
4689265
+
Intergenic
-430
NC_003070.9
4688539
4688551
AAAGTC
12
+
2
AAGTCA
AT1G13670
4688018
4689265
+
Genic
521
NC_003070.9
4689257
4689269
AAATTG
12
+
2
TGAAAT
AT1G13670
4688018
4689265
+
Genic
1239
NC_003070.9
4691405
4691417
AAT
12
-
4
ATT
AT1G13680
4690293
4692841
+
Genic
1112
NC_003070.9
4691721
4691745
AC
24
-
12
GT
AT1G13680
4690293
4692841
+
Genic
1428
NC_003070.9
4692558
4692571
AAAATT
13
-
2
TTTTAA
AT1G13680
4690293
4692841
+
Genic
2265
NC_003070.9
4692768
4692790
AT
22
+
11
AT
AT1G13680
4690293
4692841
+
Genic
2475
NC_003070.9
4693330
4693347
AAGTAG
17
+
2
AGAAGT
ATE1
4693282
4694410
+
Exon
48
NC_003070.9
4694000
4694012
AAGGAG
12
+
2
AGGAGA
ATE1
4693282
4694410
+
Exon
718
NC_003070.9
4694109
4694121
ACAGAT
12
+
2
AGATAC
ATE1
4693282
4694410
+
Exon
827
NC_003070.9
4694570
4694582
ACAGAG
12
+
2
CAGAGA
PGL1
4694372
4696023
-
Exon
1441
NC_003070.9
4696247
4696262
AC
15
+
7
AC
PGL1
4694372
4696023
-
Intergenic
-224
NC_003070.9
4696866
4696882
AAAAT
16
-
3
TATTT
AT1G05027
4697501
4698167
-
Intergenic
1285
NC_003070.9
4698292
4698304
AATTC
12
-
2
AATTG
AT1G05027
4697501
4698167
-
Intergenic
-125
NC_003070.9
4700425
4700437
AATTAC
12
+
2
ACAATT
CYP78A5
4702657
4704694
-
Intergenic
4257
