Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7276 to 7300 repeats of 170418
Go To:
<<
<
290
291
292
293
294
>
>>
Clear Filters
Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
5125619
5125631
AAGCTC
12
-
2
GAGCTT
NUDT18
5124670
5126280
+
Exon
949
NC_003070.9
5126413
5126425
ACCATC
12
-
2
TGATGG
NUDT18
5124670
5126280
+
Intergenic
1743
NC_003070.9
5126625
5126637
AAT
12
-
4
TTA
NUDT18
5124670
5126280
+
Intergenic
1955
NC_003070.9
5126706
5126718
AGATC
12
-
2
ATCTG
NUDT18
5124670
5126280
+
Intergenic
2036
NC_003070.9
5126923
5126936
AAACTC
13
+
2
ACTCAA
NUDT18
5124670
5126280
+
Intergenic
2253
NC_003070.9
5127529
5127543
AATTC
14
-
2
AATTG
PCR2
5128344
5129731
-
Intergenic
2188
NC_003070.9
5127615
5127629
AAAACC
14
+
2
AAACCA
PCR2
5128344
5129731
-
Intergenic
2102
NC_003070.9
5128207
5128220
A
13
-
13
T
PCR2
5128344
5129731
-
Intergenic
1511
NC_003070.9
5129319
5129337
AT
18
+
9
TA
PCR2
5128344
5129731
-
Intron
394
NC_003070.9
5129460
5129473
AG
13
+
6
AG
PCR2
5128344
5129731
-
Exon
258
NC_003070.9
5130666
5130678
AT
12
+
6
TA
AT1G05127
5131512
5131859
+
Intergenic
-834
NC_003070.9
5132248
5132262
A
14
+
14
A
PCR1
5132506
5133860
-
Intergenic
1598
NC_003070.9
5135377
5135389
AAATAT
12
+
2
ATATAA
AT1G14890
5136874
5137982
+
Intergenic
-1485
NC_003070.9
5135522
5135534
AAAAT
12
+
2
AATAA
AT1G14890
5136874
5137982
+
Intergenic
-1340
NC_003070.9
5135525
5135537
AAAAAT
12
+
2
AAAATA
AT1G14890
5136874
5137982
+
Intergenic
-1337
NC_003070.9
5135846
5135861
AATATT
15
+
2
ATTAAT
AT1G14890
5136874
5137982
+
Intergenic
-1013
NC_003070.9
5137700
5137712
AACT
12
+
3
CTAA
AT1G14890
5136874
5137982
+
Genic
826
NC_003070.9
5137866
5137881
AATATT
15
+
2
TATTAA
AT1G14890
5136874
5137982
+
Genic
992
NC_003070.9
5137971
5137992
A
21
-
21
T
AT1G14890
5136874
5137982
+
Genic
1097
NC_003070.9
5138458
5138472
AAT
14
+
4
TAA
HMGA
5138116
5139467
-
Exon
995
NC_003070.9
5138924
5138937
AGC
13
+
4
CAG
HMGA
5138116
5139467
-
Exon
530
NC_003070.9
5139000
5139012
AGATCC
12
-
2
ATCTGG
HMGA
5138116
5139467
-
Exon
455
NC_003070.9
5140919
5140931
AAACAG
12
+
2
GAAACA
AT1G14910
5139712
5143735
-
Genic
2804
NC_003070.9
5141409
5141421
ACTCCT
12
-
2
GTAGGA
AT1G14910
5139712
5143735
-
Genic
2314
NC_003070.9
5143233
5143245
AAATAC
12
+
2
ACAAAT
AT1G14910
5139712
5143735
-
Genic
490