Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7351 to 7375 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
5173823
5173836
ACAGCC
13
+
2
CCACAG
QSOX1
5172232
5176479
-
Exon
2643
NC_003070.9
5175865
5175879
AG
14
+
7
GA
QSOX1
5172232
5176479
-
Intron
600
NC_003070.9
5176079
5176091
AACAAG
12
+
2
AACAAG
QSOX1
5172232
5176479
-
Exon
388
NC_003070.9
5176325
5176338
AAACAC
13
-
2
TGTTTG
QSOX1
5172232
5176479
-
Exon
141
NC_003070.9
5176502
5176515
AAAAAC
13
-
2
TGTTTT
QSOX1
5172232
5176479
-
Intergenic
-23
NC_003070.9
5177533
5177549
AG
16
-
8
CT
AT1G15030
5177480
5180049
+
Genic
53
NC_003070.9
5179130
5179142
AAATTC
12
-
2
TTGAAT
AT1G15030
5177480
5180049
+
Genic
1650
NC_003070.9
5180205
5180217
AAAATG
12
-
2
TTTCAT
GAT1_2.1
5179887
5181402
-
Exon
1185
NC_003070.9
5180363
5180375
ACAT
12
-
3
TGTA
GAT1_2.1
5179887
5181402
-
Exon
1027
NC_003070.9
5180731
5180743
AGATGG
12
-
2
ATCTCC
GAT1_2.1
5179887
5181402
-
Exon
659
NC_003070.9
5181611
5181623
ATATCC
12
-
2
ATGGAT
GAT1_2.1
5179887
5181402
-
Intergenic
-209
NC_003070.9
5183079
5183091
AAGGCT
12
+
2
GCTAAG
IAA34
5181991
5183413
-
Intron
322
NC_003070.9
5184871
5184884
AAAAAG
13
-
2
TTTTCT
AT1G15060
5183258
5187106
-
Genic
2222
NC_003070.9
5186059
5186071
ACCTGC
12
-
2
GGTGCA
AT1G15060
5183258
5187106
-
Genic
1035
NC_003070.9
5187282
5187294
AAATT
12
+
2
TTAAA
AT1G15060
5183258
5187106
-
Intergenic
-176
NC_003070.9
5189111
5189123
AAAC
12
-
3
GTTT
LPP2
5187549
5189673
+
Exon
1562
NC_003070.9
5189670
5189682
AAAAG
12
+
2
AGAAA
LPP2
5187549
5189673
+
Exon
2121
NC_003070.9
5190234
5190248
AAAAGT
14
-
2
ACTTTT
AT1G15090
5189687
5189760
-
Intergenic
-474
NC_003070.9
5190566
5190579
AATATG
13
-
2
TCATAT
AT1G15090
5189687
5189760
-
Intergenic
-806
NC_003070.9
5190614
5190626
AATATG
12
+
2
ATATGA
AT1G15090
5189687
5189760
-
Intergenic
-854
NC_003070.9
5191023
5191041
ACTGAG
18
+
3
TGAGAC
AT1G05153
5191674
5192677
+
Intergenic
-633
NC_003070.9
5191265
5191277
AC
12
-
6
GT
AT1G05153
5191674
5192677
+
Intergenic
-397
NC_003070.9
5192066
5192079
A
13
+
13
A
AT1G05153
5191674
5192677
+
Genic
392
NC_003070.9
5192154
5192170
AAG
16
-
5
TCT
AT1G05153
5191674
5192677
+
Genic
480
NC_003070.9
5192467
5192479
AAAC
12
-
3
TTGT
AT1G15085
5192219
5192854
+
Genic
248
