Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7726 to 7750 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
5449392
5449405
AGG
13
+
4
GAG
AT1G15830
5448060
5450617
+
Genic
1332
NC_003070.9
5449541
5449554
ACC
13
-
4
GGT
AT1G15830
5448060
5450617
+
Genic
1481
NC_003070.9
5450045
5450058
ACC
13
-
4
GGT
AT1G15830
5448060
5450617
+
Genic
1985
NC_003070.9
5450074
5450086
AGGCGG
12
+
2
CGGAGG
AT1G15830
5448060
5450617
+
Genic
2014
NC_003070.9
5450338
5450350
ACACAG
12
-
2
TCTGTG
AT1G15830
5448060
5450617
+
Genic
2278
NC_003070.9
5451454
5451467
AAAC
13
+
3
ACAA
AT1G15840
5451432
5452374
+
Genic
22
NC_003070.9
5451904
5451917
ACC
13
-
4
GGT
AT1G15840
5451432
5452374
+
Genic
472
NC_003070.9
5453093
5453105
A
12
+
12
A
AT1G15850
5453245
5454088
-
Intergenic
983
NC_003070.9
5454187
5454205
AAAG
18
+
4
AGAA
AT1G15850
5453245
5454088
-
Intergenic
-99
NC_003070.9
5454364
5454377
AAAAC
13
-
2
TTTTG
AT1G15850
5453245
5454088
-
Intergenic
-276
NC_003070.9
5454717
5454729
ACAT
12
-
3
TGTA
AT1G15860
5454766
5457022
+
Intergenic
-37
NC_003070.9
5454900
5454915
AAGAG
15
-
3
CTCTT
AT1G15860
5454766
5457022
+
Genic
134
NC_003070.9
5455632
5455644
ACT
12
+
4
ACT
AT1G15860
5454766
5457022
+
Genic
866
NC_003070.9
5456212
5456224
AAGCAG
12
-
2
TTCTGC
AT1G15860
5454766
5457022
+
Genic
1446
NC_003070.9
5456319
5456331
ACATAG
12
+
2
CATAGA
AT1G15860
5454766
5457022
+
Genic
1553
NC_003070.9
5457625
5457641
AGCTC
16
-
3
CTGAG
AT1G15870
5457084
5458429
+
Genic
541
NC_003070.9
5458014
5458027
AAACAT
13
+
2
TAAACA
AT1G15870
5457084
5458429
+
Genic
930
NC_003070.9
5460191
5460205
ACGAGG
14
-
2
TCCTCG
GOS11
5458398
5460359
-
Exon
154
NC_003070.9
5460265
5460277
AACGG
12
+
2
GAACG
GOS11
5458398
5460359
-
Exon
82
NC_003070.9
5460374
5460386
AATT
12
+
3
AATT
GOS11
5458398
5460359
-
Intergenic
-15
NC_003070.9
5462720
5462735
AAGATG
15
+
2
ATGAAG
AT1G15890
5461309
5464241
+
Genic
1411
NC_003070.9
5464209
5464221
AAAAAC
12
-
2
TTTTGT
AT1G15890
5461309
5464241
+
Genic
2900
NC_003070.9
5465118
5465134
AAGACC
16
+
2
CCAAGA
FDM1
5465251
5469180
+
Intergenic
-117
NC_003070.9
5465170
5465191
AAAAAG
21
-
3
TTTTTC
FDM1
5465251
5469180
+
Intergenic
-60
NC_003070.9
5466043
5466057
AAGGTG
14
+
2
AAGGTG
FDM1
5465251
5469180
+
Exon
792