Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8826 to 8850 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003070.9
6291661
6291673
AAAAAC
12
+
2
AAAAAC
AT1G18270
6283370
6293993
-
Genic
2320
NC_003070.9
6293208
6293220
AAATC
12
+
2
ATCAA
AT1G18270
6283370
6293993
-
Genic
773
NC_003070.9
6293646
6293658
A
12
+
12
A
AT1G18270
6283370
6293993
-
Genic
335
NC_003070.9
6293656
6293668
AAG
12
+
4
AAG
AT1G18270
6283370
6293993
-
Genic
325
NC_003070.9
6293849
6293864
AT
15
+
7
TA
AT1G18270
6283370
6293993
-
Genic
129
NC_003070.9
6294418
6294433
ACGGCG
15
-
2
TCGCCG
AT1G18280
6294160
6295372
+
Genic
258
NC_003070.9
6295079
6295091
AACAGG
12
+
2
CAGGAA
AT1G18280
6294160
6295372
+
Genic
919
NC_003070.9
6295949
6295961
AAATC
12
+
2
CAAAT
AT1G18280
6294160
6295372
+
Intergenic
1789
NC_003070.9
6296560
6296576
AAAAAC
16
+
2
AAAAAC
AT1G18290
6297219
6298328
+
Intergenic
-643
NC_003070.9
6296690
6296710
ACTCT
20
+
4
CTCTA
AT1G18290
6297219
6298328
+
Intergenic
-509
NC_003070.9
6297392
6297412
AAAGAG
20
-
3
TTTCTC
AT1G18290
6297219
6298328
+
Genic
173
NC_003070.9
6298871
6298884
AAAAG
13
+
2
AAAGA
AT1G18290
6297219
6298328
+
Intergenic
1652
NC_003070.9
6299038
6299051
AAAAG
13
+
2
AAAAG
NUDT4
6299669
6301139
+
Intergenic
-618
NC_003070.9
6299612
6299628
A
16
+
16
A
NUDT4
6299669
6301139
+
Intergenic
-41
NC_003070.9
6300582
6300594
AAAAGC
12
+
2
CAAAAG
NUDT4
6299669
6301139
+
Exon
913
NC_003070.9
6300622
6300634
AAAGC
12
-
2
TTTGC
NUDT4
6299669
6301139
+
Exon
953
NC_003070.9
6301013
6301025
AATG
12
-
3
ATTC
NUDT4
6299669
6301139
+
Exon
1344
NC_003070.9
6301674
6301688
AAAACC
14
-
2
GTTTTG
AT1G18310
6301200
6303956
-
Genic
2268
NC_003070.9
6303663
6303675
ACCCGG
12
-
2
GGTCCG
AT1G18310
6301200
6303956
-
Genic
281
NC_003070.9
6303927
6303939
AAAAAG
12
+
2
AAAAGA
AT1G18310
6301200
6303956
-
Genic
17
NC_003070.9
6305587
6305599
ACTATC
12
-
2
GTGATA
AT1G18320
6304360
6305689
+
Genic
1227
NC_003070.9
6307794
6307808
AAAAAG
14
+
2
AAAAGA
EPR1
6305814
6308243
-
Exon
435
NC_003070.9
6307995
6308008
AAAG
13
+
3
AAGA
EPR1
6305814
6308243
-
Exon
235
NC_003070.9
6308065
6308078
AATCTG
13
-
2
TCAGAT
EPR1
6305814
6308243
-
Exon
165
NC_003070.9
6309041
6309056
ACTAGG
15
-
2
AGTCCT
AT1G18335
6308925
6311373
-
Genic
2317