Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 159676 to 159700 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
20396781
20396796
ATC
15
+
5
TCA
AT5G50140
20395856
20398197
+
Genic
925
NC_003076.8
20396877
20396896
AAAAAG
19
+
3
AAGAAA
AT5G50140
20395856
20398197
+
Genic
1021
NC_003076.8
20398973
20398985
AAACCC
12
-
2
TTGGGT
AT5G50140
20395856
20398197
+
Intergenic
3117
NC_003076.8
20399216
20399229
AATTAT
13
+
2
TTATAA
AT5G50140
20395856
20398197
+
Intergenic
3360
NC_003076.8
20399738
20399751
ACTAT
13
+
2
TATAC
AT5G50140
20395856
20398197
+
Intergenic
3882
NC_003076.8
20399851
20399874
AAT
23
-
7
TTA
AT5G50140
20395856
20398197
+
Intergenic
3995
NC_003076.8
20399929
20399941
AAAATC
12
-
2
ATTTTG
AT5G50140
20395856
20398197
+
Intergenic
4073
NC_003076.8
20400319
20400331
ATCG
12
+
3
GATC
AT5G50150
20402217
20406731
-
Intergenic
6400
NC_003076.8
20400620
20400632
AAAATG
12
-
2
ATTTTC
AT5G50150
20402217
20406731
-
Intergenic
6099
NC_003076.8
20400721
20400733
AATCAT
12
-
2
ATTATG
AT5G50150
20402217
20406731
-
Intergenic
5998
NC_003076.8
20401031
20401044
AAACCC
13
-
2
TTTGGG
AT5G50150
20402217
20406731
-
Intergenic
5687
NC_003076.8
20401174
20401187
AAAACT
13
-
2
TTTTAG
AT5G50150
20402217
20406731
-
Intergenic
5544
NC_003076.8
20402229
20402241
AAAATT
12
+
2
AATTAA
AT5G50150
20402217
20406731
-
Genic
4490
NC_003076.8
20402348
20402361
A
13
+
13
A
AT5G50150
20402217
20406731
-
Genic
4370
NC_003076.8
20402885
20402897
ACTAT
12
-
2
AGTAT
AT5G50150
20402217
20406731
-
Genic
3834
NC_003076.8
20406349
20406371
AAG
22
+
7
GAA
AT5G50150
20402217
20406731
-
Genic
360
NC_003076.8
20406466
20406478
AAG
12
+
4
AAG
AT5G50150
20402217
20406731
-
Genic
253
NC_003076.8
20406481
20406496
AATGAG
15
+
2
GAATGA
AT5G50150
20402217
20406731
-
Genic
235
NC_003076.8
20406661
20406676
AAAT
15
+
3
AAAT
AT5G50150
20402217
20406731
-
Genic
55
NC_003076.8
20407118
20407130
AAAG
12
+
3
AAAG
AT5G50150
20402217
20406731
-
Intergenic
-387
NC_003076.8
20408131
20408143
AAC
12
+
4
CAA
AT5G50150
20402217
20406731
-
Intergenic
-1400
NC_003076.8
20408266
20408278
AATGC
12
-
2
TTGCA
AT5G50150
20402217
20406731
-
Intergenic
-1535
NC_003076.8
20409097
20409117
AAAT
20
+
5
TAAA
AT5G50150
20402217
20406731
-
Intergenic
-2366
NC_003076.8
20410057
20410069
AAATCC
12
-
2
GGATTT
AT5G07585
20412424
20412701
-
Intergenic
2632
NC_003076.8
20410896
20410911
AAAAAC
15
+
2
AAAAAC
AT5G07585
20412424
20412701
-
Intergenic
1790