Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 162701 to 162725 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
22395010
22395022
AACATT
12
-
2
AATGTT
MGE1
22394550
22396572
+
Intron
460
NC_003076.8
22395233
22395245
AAGAGG
12
-
2
TTCCTC
MGE1
22394550
22396572
+
Exon
683
NC_003076.8
22396513
22396527
AAAGCC
14
+
2
AAGCCA
MGE1
22394550
22396572
+
Exon
1963
NC_003076.8
22401766
22401781
AAAAG
15
+
3
AAGAA
MAP65-1
22401927
22405568
+
Intergenic
-146
NC_003076.8
22401943
22401955
A
12
+
12
A
MAP65-1
22401927
22405568
+
Exon
16
NC_003076.8
22402165
22402177
AAAAAG
12
-
2
CTTTTT
MAP65-1
22401927
22405568
+
Exon
238
NC_003076.8
22402642
22402654
AAACT
12
-
2
TTAGT
MAP65-1
22401927
22405568
+
Intron
715
NC_003076.8
22402646
22402658
AAAACT
12
-
2
TTTAGT
MAP65-1
22401927
22405568
+
Intron
719
NC_003076.8
22402667
22402680
AAAAAC
13
-
2
GTTTTT
MAP65-1
22401927
22405568
+
Intron
740
NC_003076.8
22405303
22405315
ACACAT
12
-
2
ATGTGT
MAP65-1
22401927
22405568
+
Exon
3376
NC_003076.8
22405310
22405323
AC
13
-
6
TG
MAP65-1
22401927
22405568
+
Exon
3383
NC_003076.8
22405546
22405560
AAAATC
14
-
2
TTTGAT
MAP65-1
22401927
22405568
+
Exon
3619
NC_003076.8
22405711
22405725
AACTAG
14
-
2
GTTCTA
MAP65-1
22401927
22405568
+
Intergenic
3784
NC_003076.8
22405741
22405753
AAACTG
12
-
2
GTTTCA
ATPXG2
22405896
22407351
+
Intergenic
-143
NC_003076.8
22407227
22407239
AATTC
12
-
2
AATTG
ATPXG2
22405896
22407351
+
Exon
1331
NC_003076.8
22408387
22408400
AAAATG
13
-
2
TTCATT
IAMT1
22407427
22410974
-
Intron
2574
NC_003076.8
22409272
22409284
AATT
12
+
3
ATTA
IAMT1
22407427
22410974
-
Intron
1690
NC_003076.8
22410476
22410488
AAATC
12
+
2
CAAAT
IAMT1
22407427
22410974
-
Intron
486
NC_003076.8
22410853
22410871
AAAGAG
18
-
3
TTCTCT
IAMT1
22407427
22410974
-
Exon
103
NC_003076.8
22412984
22412998
AAAAT
14
+
2
AAAAT
IAMT1
22407427
22410974
-
Intergenic
-2010
NC_003076.8
22413848
22413860
AAATCC
12
-
2
GGATTT
PPX2
22416578
22418990
+
Intergenic
-2718
NC_003076.8
22414372
22414384
AAGTAT
12
-
2
ATACTT
PPX2
22416578
22418990
+
Intergenic
-2194
NC_003076.8
22414410
22414422
AAATCT
12
-
2
AGATTT
PPX2
22416578
22418990
+
Intergenic
-2156
NC_003076.8
22414426
22414438
AATCT
12
+
2
AATCT
PPX2
22416578
22418990
+
Intergenic
-2140
NC_003076.8
22414547
22414559
AAAC
12
-
3
TTTG
PPX2
22416578
22418990
+
Intergenic
-2019