Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 162776 to 162800 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
22449762
22449777
AATGAG
15
+
2
AATGAG
EDM2
22447937
22454805
-
Exon
5028
NC_003076.8
22450158
22450170
AC
12
+
6
CA
EDM2
22447937
22454805
-
Intron
4635
NC_003076.8
22451826
22451838
AACCTT
12
+
2
CCTTAA
EDM2
22447937
22454805
-
Exon
2967
NC_003076.8
22452205
22452218
AATG
13
+
3
ATGA
EDM2
22447937
22454805
-
Intron
2587
NC_003076.8
22453342
22453354
AAGATG
12
-
2
TTCATC
EDM2
22447937
22454805
-
Exon
1451
NC_003076.8
22454497
22454509
AAATAG
12
+
2
AGAAAT
EDM2
22447937
22454805
-
Exon
296
NC_003076.8
22454869
22454882
AAAAAC
13
-
2
TGTTTT
EDM2
22447937
22454805
-
Intergenic
-64
NC_003076.8
22455184
22455199
AG
15
+
7
AG
AT5G00660
22455098
22455280
+
Genic
86
NC_003076.8
22455236
22455248
AAATAT
12
+
2
ATAAAT
AT5G00660
22455098
22455280
+
Genic
138
NC_003076.8
22455414
22455427
AACAAT
13
-
2
TTATTG
AT5G55400
22455369
22459598
-
Genic
4171
NC_003076.8
22456105
22456117
AAAGAG
12
+
2
AAGAGA
AT5G55400
22455369
22459598
-
Genic
3481
NC_003076.8
22456326
22456338
AAAAGT
12
+
2
TAAAAG
AT5G55400
22455369
22459598
-
Genic
3260
NC_003076.8
22458568
22458584
AACAC
16
+
3
AACAC
AT5G55400
22455369
22459598
-
Genic
1014
NC_003076.8
22459228
22459241
AAAAAT
13
+
2
AATAAA
AT5G55400
22455369
22459598
-
Genic
357
NC_003076.8
22459442
22459455
AG
13
+
6
AG
AT5G55400
22455369
22459598
-
Genic
143
NC_003076.8
22460628
22460640
ATCATG
12
+
2
TCATGA
AT5G55410
22460550
22461385
+
Genic
78
NC_003076.8
22461810
22461822
AG
12
+
6
GA
AT5G55410
22460550
22461385
+
Intergenic
1260
NC_003076.8
22462989
22463001
AATGG
12
-
2
ATTCC
AT5G55430
22464589
22465227
+
Intergenic
-1588
NC_003076.8
22463472
22463485
AAAAT
13
+
2
ATAAA
AT5G55430
22464589
22465227
+
Intergenic
-1104
NC_003076.8
22463658
22463671
AT
13
+
6
TA
AT5G55430
22464589
22465227
+
Intergenic
-918
NC_003076.8
22464107
22464121
AAAAAT
14
+
2
AAAATA
AT5G55430
22464589
22465227
+
Intergenic
-468
NC_003076.8
22464553
22464565
AAAGGT
12
+
2
AAAGGT
AT5G55430
22464589
22465227
+
Intergenic
-24
NC_003076.8
22464728
22464740
AAGTCT
12
+
2
TCTAAG
AT5G55430
22464589
22465227
+
Genic
139
NC_003076.8
22464803
22464817
AAG
14
+
4
GAA
AT5G55430
22464589
22465227
+
Genic
214
NC_003076.8
22464822
22464837
AAG
15
+
5
AAG
AT5G55430
22464589
22465227
+
Genic
233