Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 162951 to 162975 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
22535216
22535229
ACTATG
13
+
2
ACTATG
AT5G55650
22536072
22536976
+
Intergenic
-843
NC_003076.8
22535584
22535611
ATATC
27
+
5
ATATC
AT5G55650
22536072
22536976
+
Intergenic
-461
NC_003076.8
22535613
22535625
ATATC
12
+
2
ATATC
AT5G55650
22536072
22536976
+
Intergenic
-447
NC_003076.8
22536029
22536041
AAAAGG
12
-
2
CTTTTC
AT5G55650
22536072
22536976
+
Intergenic
-31
NC_003076.8
22536129
22536142
AG
13
-
6
TC
AT5G55650
22536072
22536976
+
Genic
57
NC_003076.8
22536617
22536636
ATC
19
-
6
GAT
AT5G55650
22536072
22536976
+
Genic
545
NC_003076.8
22536985
22537022
AT
37
+
18
AT
AT5G55650
22536072
22536976
+
Intergenic
913
NC_003076.8
22537120
22537134
AAAAC
14
+
2
AAAAC
AT5G55650
22536072
22536976
+
Intergenic
1048
NC_003076.8
22537237
22537249
AAG
12
-
4
TTC
AT5G55650
22536072
22536976
+
Intergenic
1165
NC_003076.8
22537644
22537656
AATATT
12
+
2
AATATT
AT5G55650
22536072
22536976
+
Intergenic
1572
NC_003076.8
22537715
22537728
AAAAAC
13
-
2
TTTTGT
AT5G55650
22536072
22536976
+
Intergenic
1643
NC_003076.8
22538048
22538061
ACTAT
13
-
2
ATAGT
AT5G55660
22538556
22543474
+
Intergenic
-495
NC_003076.8
22538678
22538691
A
13
+
13
A
AT5G55660
22538556
22543474
+
Genic
122
NC_003076.8
22538828
22538842
A
14
-
14
T
AT5G55660
22538556
22543474
+
Genic
272
NC_003076.8
22538923
22538937
AAACT
14
-
2
TTAGT
AT5G55660
22538556
22543474
+
Genic
367
NC_003076.8
22538931
22538943
AAACCT
12
-
2
GTTTAG
AT5G55660
22538556
22543474
+
Genic
375
NC_003076.8
22540273
22540285
AAAGGG
12
+
2
AGGGAA
AT5G55660
22538556
22543474
+
Genic
1717
NC_003076.8
22541181
22541193
AATATG
12
-
2
TCATAT
AT5G55660
22538556
22543474
+
Genic
2625
NC_003076.8
22543089
22543104
AAAGAG
15
+
2
AAGAGA
AT5G55660
22538556
22543474
+
Genic
4533
NC_003076.8
22543705
22543717
ACATCC
12
-
2
GATGTG
AT5G55670
22543728
22547062
-
Intergenic
3345
NC_003076.8
22543818
22543830
A
12
+
12
A
AT5G55670
22543728
22547062
-
Genic
3232
NC_003076.8
22544842
22544855
AACGAG
13
-
2
TCGTTC
AT5G55670
22543728
22547062
-
Genic
2207
NC_003076.8
22544873
22544887
AAAGGG
14
-
2
TCCCTT
AT5G55670
22543728
22547062
-
Genic
2175
NC_003076.8
22544941
22544953
ACGCTC
12
+
2
CTCACG
AT5G55670
22543728
22547062
-
Genic
2109
NC_003076.8
22545304
22545316
AATGGG
12
-
2
CATTCC
AT5G55670
22543728
22547062
-
Genic
1746