Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 163426 to 163450 repeats of 170418
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
22834858
22834870
AACCT
12
+
2
TAACC
AT5G56368
22833964
22834645
+
Intergenic
894
NC_003076.8
22834996
22835008
AAATC
12
-
2
TGATT
AT5G56368
22833964
22834645
+
Intergenic
1032
NC_003076.8
22837214
22837226
AAAACT
12
-
2
TTTTAG
AT5G56370
22835931
22837972
-
Genic
746
NC_003076.8
22839464
22839476
AAACAT
12
+
2
ATAAAC
AT5G56380
22838633
22841117
-
Genic
1641
NC_003076.8
22841328
22841351
A
23
+
23
A
AT5G56380
22838633
22841117
-
Intergenic
-211
NC_003076.8
22841470
22841487
A
17
-
17
T
AT5G56380
22838633
22841117
-
Intergenic
-353
NC_003076.8
22841525
22841539
AAATCC
14
+
2
CAAATC
AT5G56380
22838633
22841117
-
Intergenic
-408
NC_003076.8
22841894
22841913
A
19
-
19
T
AT5G56380
22838633
22841117
-
Intergenic
-777
NC_003076.8
22846040
22846052
AAAAAC
12
+
2
CAAAAA
AT5G56400
22846069
22847615
-
Intergenic
1563
NC_003076.8
22848140
22848152
AATAT
12
+
2
TATAA
AT5G56410
22848508
22850331
-
Intergenic
2179
NC_003076.8
22848945
22848957
AAGGAC
12
-
2
TTGTCC
AT5G56410
22848508
22850331
-
Genic
1374
NC_003076.8
22850135
22850148
AAGTAG
13
-
2
TTCTAC
AT5G56410
22848508
22850331
-
Genic
183
NC_003076.8
22850406
22850420
AGAGGC
14
+
2
AGGCAG
AT5G56410
22848508
22850331
-
Intergenic
-75
NC_003076.8
22852864
22852880
AG
16
+
8
AG
AT5G56420
22850584
22852753
-
Intergenic
-111
NC_003076.8
22853106
22853118
AAGAG
12
+
2
AGAGA
AT5G56430
22853323
22854801
-
Intergenic
1683
NC_003076.8
22857423
22857440
A
17
+
17
A
AT5G56440
22855742
22857117
-
Intergenic
-306
NC_003076.8
22858583
22858595
AAAAG
12
+
2
AAAAG
PM-ANT
22858509
22860071
-
Exon
1476
NC_003076.8
22859938
22859950
AAAACC
12
+
2
AAAACC
PM-ANT
22858509
22860071
-
Exon
121
NC_003076.8
22859974
22859987
AAAG
13
+
3
AAAG
PM-ANT
22858509
22860071
-
Exon
84
NC_003076.8
22860126
22860139
AAGCCC
13
-
2
TTGGGC
PM-ANT
22858509
22860071
-
Intergenic
-55
NC_003076.8
22860188
22860201
AAAACC
13
+
2
CAAAAC
PM-ANT
22858509
22860071
-
Intergenic
-117
NC_003076.8
22861767
22861779
AAAATC
12
+
2
ATCAAA
AT5G56452
22860450
22861818
-
Genic
39
NC_003076.8
22862313
22862330
AATCAG
17
+
2
CAGAAT
AT5G56452
22860450
22861818
-
Intergenic
-495
NC_003076.8
22862495
22862507
AAAAAG
12
-
2
TTTTTC
AT5G56452
22860450
22861818
-
Intergenic
-677
NC_003076.8
22862682
22862694
AAAGAT
12
-
2
TTATCT
AT5G56452
22860450
22861818
-
Intergenic
-864