Showing repeats of Arabidopsis thaliana (Mouse-ear cress)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 163601 to 163625 repeats of 170418
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6543
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
NC_003076.8
22972213
22972225
AATCAG
12
-
2
TCTGAT
MT1B
22971713
22972690
-
Intron
465
NC_003076.8
22972478
22972492
AAG
14
-
4
TTC
MT1B
22971713
22972690
-
Exon
198
NC_003076.8
22974785
22974798
AACCCT
13
+
2
AACCCT
AT5G56810
22974363
22976112
+
Genic
422
NC_003076.8
22976262
22976274
AAAAAG
12
-
2
TTTTCT
AT5G56820
22976334
22977838
+
Intergenic
-60
NC_003076.8
22976420
22976432
AATG
12
-
3
TCAT
AT5G56820
22976334
22977838
+
Genic
86
NC_003076.8
22976501
22976513
AAGATC
12
-
2
CTTGAT
AT5G56820
22976334
22977838
+
Genic
167
NC_003076.8
22978222
22978236
AATCCT
14
-
2
ATTAGG
AT5G56820
22976334
22977838
+
Intergenic
1888
NC_003076.8
22979074
22979089
AAAACC
15
-
2
TTTGGT
AT5G56820
22976334
22977838
+
Intergenic
2740
NC_003076.8
22979758
22979771
AAAATT
13
-
2
TTAATT
AT5G56840
22980638
22982425
+
Intergenic
-867
NC_003076.8
22980107
22980119
AAAAAC
12
+
2
AAACAA
AT5G56840
22980638
22982425
+
Intergenic
-519
NC_003076.8
22980376
22980388
AATAG
12
-
2
ATTCT
AT5G56840
22980638
22982425
+
Intergenic
-250
NC_003076.8
22980713
22980726
ATC
13
+
4
TCA
AT5G56840
22980638
22982425
+
Genic
75
NC_003076.8
22980911
22980925
AGG
14
-
4
CCT
AT5G56840
22980638
22982425
+
Genic
273
NC_003076.8
22980986
22981002
AAGAGG
16
-
2
TCCTCT
AT5G56840
22980638
22982425
+
Genic
348
NC_003076.8
22982046
22982058
ACTGAT
12
-
2
AGTATC
AT5G56840
22980638
22982425
+
Genic
1408
NC_003076.8
22982232
22982246
AAAATC
14
-
2
TTTGAT
AT5G56840
22980638
22982425
+
Genic
1594
NC_003076.8
22982801
22982813
AAAAAG
12
+
2
GAAAAA
AT5G56840
22980638
22982425
+
Intergenic
2163
NC_003076.8
22982913
22982925
AATAT
12
-
2
ATATT
AT5G56840
22980638
22982425
+
Intergenic
2275
NC_003076.8
22983026
22983043
AAAATT
17
-
2
TAATTT
AT5G56840
22980638
22982425
+
Intergenic
2388
NC_003076.8
22983184
22983198
A
14
-
14
T
AT5G56840
22980638
22982425
+
Intergenic
2546
NC_003076.8
22985344
22985356
AAAGT
12
-
2
TACTT
AT5G56850
22985115
22988110
-
Genic
2754
NC_003076.8
22985839
22985855
AAATCC
16
+
2
AAATCC
AT5G56850
22985115
22988110
-
Genic
2255
NC_003076.8
22987016
22987031
AAGAGC
15
+
2
CAAGAG
AT5G56850
22985115
22988110
-
Genic
1079
NC_003076.8
22987031
22987044
AAAC
13
+
3
AAAC
AT5G56850
22985115
22988110
-
Genic
1066
NC_003076.8
22987411
22987423
AGAGAT
12
-
2
TCTCTA
AT5G56850
22985115
22988110
-
Genic
687