Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5426 to 5450 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
3912456
3912473
C
17
-
17
G
ENSGALT00000105830.1
3908684
4026387
+
Intron
3772
chr1
3918720
3918732
AATCAT
12
+
2
CATAAT
ENSGALT00000105830.1
3908684
4026387
+
Intron
10036
chr1
3919325
3919337
ACAGCC
12
-
2
TGGCTG
ENSGALT00000105830.1
3908684
4026387
+
Intron
10641
chr1
3919640
3919652
AGATC
12
-
2
ATCTG
ENSGALT00000105830.1
3908684
4026387
+
Intron
10956
chr1
3924503
3924515
AAGAG
12
-
2
TTCTC
ENSGALT00000105830.1
3908684
4026387
+
Intron
15819
chr1
3925158
3925170
AAGATG
12
+
2
TGAAGA
ENSGALT00000105830.1
3908684
4026387
+
Intron
16474
chr1
3926010
3926022
AATGTG
12
+
2
TGTGAA
ENSGALT00000105830.1
3908684
4026387
+
Intron
17326
chr1
3928062
3928074
AACAG
12
+
2
AGAAC
ENSGALT00000105830.1
3908684
4026387
+
Intron
19378
chr1
3930412
3930424
A
12
+
12
A
ENSGALT00000105830.1
3908684
4026387
+
Intron
21728
chr1
3930585
3930597
AAGGTG
12
+
2
GGTGAA
ENSGALT00000105830.1
3908684
4026387
+
Intron
21901
chr1
3932884
3932896
ACAG
12
-
3
TCTG
ENSGALT00000105830.1
3908684
4026387
+
Intron
24200
chr1
3935382
3935394
A
12
-
12
T
ENSGALT00000105830.1
3908684
4026387
+
Intron
26698
chr1
3936648
3936668
AC
20
-
10
GT
ENSGALT00000105830.1
3908684
4026387
+
Intron
27964
chr1
3939093
3939105
AAACCC
12
+
2
AAACCC
ENSGALT00000105830.1
3908684
4026387
+
Intron
30409
chr1
3939412
3939424
AAAATG
12
+
2
TGAAAA
ENSGALT00000105830.1
3908684
4026387
+
Intron
30728
chr1
3939544
3939558
AAACAC
14
-
2
TTTGTG
ENSGALT00000105830.1
3908684
4026387
+
Intron
30860
chr1
3940736
3940748
A
12
-
12
T
ENSGALT00000105830.1
3908684
4026387
+
Intron
32052
chr1
3941606
3941618
AATGCT
12
-
2
GCATTA
ENSGALT00000105830.1
3908684
4026387
+
Intron
32922
chr1
3942215
3942228
ACAGAT
13
-
2
ATCTGT
ENSGALT00000105830.1
3908684
4026387
+
Intron
33531
chr1
3942739
3942760
AC
21
-
10
GT
ENSGALT00000105830.1
3908684
4026387
+
Intron
34055
chr1
3944563
3944575
AAATAG
12
+
2
AGAAAT
ENSGALT00000105830.1
3908684
4026387
+
Intron
35879
chr1
3944910
3944922
AATAT
12
+
2
AATAT
ENSGALT00000105830.1
3908684
4026387
+
Intron
36226
chr1
3944957
3944969
ACAT
12
-
3
TGTA
ENSGALT00000105830.1
3908684
4026387
+
Intron
36273
chr1
3945192
3945204
AAAAAG
12
-
2
TTTTTC
ENSGALT00000105830.1
3908684
4026387
+
Intron
36508
chr1
3946866
3946881
AACAG
15
+
3
GAACA
ENSGALT00000105830.1
3908684
4026387
+
Intron
38182