Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5476 to 5500 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
3977357
3977370
AGCCCC
13
+
2
CCCCAG
ENSGALT00000105830.1
3908684
4026387
+
Intron
68673
chr1
3979002
3979016
AAAAC
14
-
2
TTTGT
ENSGALT00000105830.1
3908684
4026387
+
Intron
70318
chr1
3980285
3980297
AAGG
12
+
3
AGGA
ENSGALT00000105830.1
3908684
4026387
+
Intron
71601
chr1
3982324
3982336
AAACC
12
-
2
TGGTT
ENSGALT00000105830.1
3908684
4026387
+
Intron
73640
chr1
3983206
3983219
AAAAC
13
-
2
TTTTG
ENSGALT00000105830.1
3908684
4026387
+
Intron
74522
chr1
3987302
3987314
AAG
12
+
4
GAA
ENSGALT00000105830.1
3908684
4026387
+
Intron
78618
chr1
3987558
3987575
A
17
+
17
A
ENSGALT00000105830.1
3908684
4026387
+
Intron
78874
chr1
3993305
3993320
C
15
+
15
C
ENSGALT00000105830.1
3908684
4026387
+
Intron
84621
chr1
3995319
3995332
AAT
13
+
4
TAA
ENSGALT00000105830.1
3908684
4026387
+
Intron
86635
chr1
3995380
3995395
AAAAAT
15
-
2
TTTATT
ENSGALT00000105830.1
3908684
4026387
+
Intron
86696
chr1
3996657
3996669
AAACAG
12
+
2
GAAACA
ENSGALT00000105830.1
3908684
4026387
+
Intron
87973
chr1
3997776
3997789
AAGAGG
13
+
2
AGAGGA
ENSGALT00000105830.1
3908684
4026387
+
Intron
89092
chr1
3998639
3998651
AACAG
12
-
2
GTTCT
ENSGALT00000105830.1
3908684
4026387
+
Intron
89955
chr1
3999507
3999520
A
13
+
13
A
ENSGALT00000105830.1
3908684
4026387
+
Intron
90823
chr1
4000146
4000164
A
18
+
18
A
ENSGALT00000105830.1
3908684
4026387
+
Intron
91462
chr1
4000194
4000206
AAAGG
12
-
2
TTTCC
ENSGALT00000105830.1
3908684
4026387
+
Intron
91510
chr1
4000339
4000351
AAAGGG
12
+
2
GAAAGG
ENSGALT00000105830.1
3908684
4026387
+
Intron
91655
chr1
4000521
4000538
A
17
+
17
A
ENSGALT00000105830.1
3908684
4026387
+
Intron
91837
chr1
4000886
4000898
AAAAC
12
-
2
TTTTG
ENSGALT00000105830.1
3908684
4026387
+
Intron
92202
chr1
4001546
4001558
AATCGC
12
+
2
GCAATC
ENSGALT00000105830.1
3908684
4026387
+
Intron
92862
chr1
4001566
4001578
AAAAAC
12
+
2
AAACAA
ENSGALT00000105830.1
3908684
4026387
+
Intron
92882
chr1
4002735
4002749
AGCATG
14
-
2
TGCTCA
ENSGALT00000105830.1
3908684
4026387
+
Intron
94051
chr1
4003001
4003014
AAATTG
13
-
2
TTTCAA
ENSGALT00000105830.1
3908684
4026387
+
Intron
94317
chr1
4005326
4005341
AC
15
+
7
CA
ENSGALT00000105830.1
3908684
4026387
+
Intron
96642
chr1
4006659
4006671
ACAGC
12
+
2
CACAG
ENSGALT00000105830.1
3908684
4026387
+
Intron
97975