Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5501 to 5525 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4006983
4006995
AACTTC
12
-
2
TGAAGT
ENSGALT00000105830.1
3908684
4026387
+
Intron
98299
chr1
4007039
4007052
A
13
-
13
T
ENSGALT00000105830.1
3908684
4026387
+
Intron
98355
chr1
4008252
4008265
A
13
-
13
T
ENSGALT00000105830.1
3908684
4026387
+
Intron
99568
chr1
4008512
4008524
AAGCC
12
-
2
TTGGC
ENSGALT00000105830.1
3908684
4026387
+
Intron
99828
chr1
4010754
4010766
AGC
12
+
4
CAG
ENSGALT00000105830.1
3908684
4026387
+
Intron
102070
chr1
4012339
4012351
AAAGAG
12
-
2
TCTTTC
ENSGALT00000105830.1
3908684
4026387
+
Intron
103655
chr1
4015133
4015145
AAAGGG
12
+
2
GGAAAG
ENSGALT00000105830.1
3908684
4026387
+
Intron
106449
chr1
4017340
4017352
AAAAC
12
-
2
TTTGT
ENSGALT00000105830.1
3908684
4026387
+
Intron
108656
chr1
4017345
4017384
AAAC
39
-
9
TTTG
ENSGALT00000105830.1
3908684
4026387
+
Intron
108661
chr1
4020630
4020642
ATCCC
12
+
2
ATCCC
ENSGALT00000101201.1
4020062
4021279
-
Exon
637
chr1
4021780
4021792
AATGCC
12
-
2
GGCATT
ENSGALT00000105830.1
3908684
4026387
+
Intron
113096
chr1
4024267
4024282
A
15
-
15
T
ENSGALT00000105830.1
3908684
4026387
+
Intron
115583
chr1
4024837
4024853
A
16
-
16
T
ENSGALT00000105830.1
3908684
4026387
+
Intron
116153
chr1
4025429
4025443
A
14
+
14
A
ENSGALT00000105830.1
3908684
4026387
+
Intron
116745
chr1
4025820
4025834
A
14
-
14
T
ENSGALT00000105830.1
3908684
4026387
+
Intron
117136
chr1
4025838
4025850
AATCAG
12
+
2
GAATCA
ENSGALT00000105830.1
3908684
4026387
+
Intron
117154
chr1
4026055
4026074
AAAC
19
-
4
TTTG
ENSGALT00000105830.1
3908684
4026387
+
Exon
117371
chr1
4026110
4026122
AAAAAT
12
-
2
ATTTTT
ENSGALT00000105830.1
3908684
4026387
+
Exon
117426
chr1
4026359
4026373
AAAAT
14
+
2
AAAAT
ENSGALT00000105830.1
3908684
4026387
+
Exon
117675
chr1
4030667
4030679
AAGATC
12
+
2
TCAAGA
ENSGALT00000028942.2
4030403
4030491
+
Intergenic
264
chr1
4031293
4031306
AAAC
13
-
3
TGTT
ENSGALT00000028942.2
4030403
4030491
+
Intergenic
890
chr1
4032190
4032202
AAGAG
12
+
2
AAGAG
ENSGALT00000028942.2
4030403
4030491
+
Intergenic
1787
chr1
4032312
4032325
ACATCT
13
-
2
AGATGT
ENSGALT00000028942.2
4030403
4030491
+
Intergenic
1909
chr1
4036092
4036106
AAAACC
14
+
2
CAAAAC
ENSGALT00000028942.2
4030403
4030491
+
Intergenic
5689
chr1
4036404
4036417
AATCGG
13
+
2
ATCGGA
ENSGALT00000028942.2
4030403
4030491
+
Intergenic
6001