Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5601 to 5625 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4108183
4108197
AT
14
+
7
AT
ENSGALT00000010237.6
4112110
4125975
+
Intergenic
-3913
chr1
4109398
4109410
AAATAG
12
-
2
ATTTCT
ENSGALT00000010237.6
4112110
4125975
+
Intergenic
-2700
chr1
4109651
4109671
AAG
20
-
6
TTC
ENSGALT00000010237.6
4112110
4125975
+
Intergenic
-2439
chr1
4110388
4110401
ACAGC
13
-
2
TGTGC
ENSGALT00000010237.6
4112110
4125975
+
Intergenic
-1709
chr1
4110548
4110560
AAAG
12
-
3
TTTC
ENSGALT00000010237.6
4112110
4125975
+
Intergenic
-1550
chr1
4112109
4112121
AGGCGC
12
+
2
GCGCAG
ENSGALT00000010237.6
4112110
4125975
+
Exon
-1
chr1
4113466
4113478
AAATG
12
-
2
ATTTC
ENSGALT00000010237.6
4112110
4125975
+
Intron
1356
chr1
4113584
4113596
AACTGT
12
-
2
TACAGT
ENSGALT00000010237.6
4112110
4125975
+
Intron
1474
chr1
4114564
4114579
A
15
-
15
T
ENSGALT00000010237.6
4112110
4125975
+
Intron
2454
chr1
4114875
4114887
AACAGT
12
-
2
TACTGT
ENSGALT00000010237.6
4112110
4125975
+
Intron
2765
chr1
4115613
4115625
ACTCTG
12
-
2
TCAGAG
ENSGALT00000010237.6
4112110
4125975
+
Exon
3503
chr1
4117543
4117558
AAGATG
15
+
2
GATGAA
ENSGALT00000010237.6
4112110
4125975
+
Exon
5433
chr1
4117621
4117633
AGG
12
+
4
GGA
ENSGALT00000010237.6
4112110
4125975
+
Intron
5511
chr1
4117826
4117838
AAAATT
12
-
2
ATTTTA
ENSGALT00000010237.6
4112110
4125975
+
Intron
5716
chr1
4119314
4119327
AAAAT
13
+
2
TAAAA
ENSGALT00000010237.6
4112110
4125975
+
Intron
7204
chr1
4119710
4119722
AGGGG
12
+
2
AGGGG
ENSGALT00000010237.6
4112110
4125975
+
Intron
7600
chr1
4120123
4120139
AATCT
16
+
3
TAATC
ENSGALT00000010237.6
4112110
4125975
+
Intron
8013
chr1
4120248
4120260
AAGTGT
12
+
2
AGTGTA
ENSGALT00000010237.6
4112110
4125975
+
Intron
8138
chr1
4121618
4121632
AAAAC
14
+
2
AAAAC
ENSGALT00000010237.6
4112110
4125975
+
Intron
9508
chr1
4128715
4128727
AAT
12
-
4
ATT
ENSGALT00000010237.6
4112110
4125975
+
Intergenic
16605
chr1
4128732
4128744
AAAAAG
12
-
2
TTTTTC
ENSGALT00000010237.6
4112110
4125975
+
Intergenic
16622
chr1
4129302
4129314
AAGATG
12
-
2
CTTCAT
ENSGALT00000010237.6
4112110
4125975
+
Intergenic
17192
chr1
4131205
4131220
AAAC
15
+
3
AAAC
ENSGALT00000010237.6
4112110
4125975
+
Intergenic
19095
chr1
4131843
4131855
AAAGAG
12
-
2
CTTTCT
ENSGALT00000010237.6
4112110
4125975
+
Intergenic
19733
chr1
4133255
4133270
AAACAT
15
+
2
AAACAT
ENSGALT00000075327.2
4138801
4175660
+
Intergenic
-5531