Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5626 to 5650 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4133274
4133287
AGCCC
13
+
2
AGCCC
ENSGALT00000075327.2
4138801
4175660
+
Intergenic
-5514
chr1
4133434
4133448
A
14
+
14
A
ENSGALT00000075327.2
4138801
4175660
+
Intergenic
-5353
chr1
4137207
4137219
AGCCTC
12
-
2
GAGGCT
ENSGALT00000075327.2
4138801
4175660
+
Intergenic
-1582
chr1
4137272
4137284
ACTGCC
12
+
2
TGCCAC
ENSGALT00000075327.2
4138801
4175660
+
Intergenic
-1517
chr1
4138062
4138074
AGCAGG
12
-
2
CCTGCT
ENSGALT00000075327.2
4138801
4175660
+
Intergenic
-727
chr1
4139035
4139055
C
20
-
20
G
ENSGALT00000075327.2
4138801
4175660
+
Intron
234
chr1
4139693
4139705
ACCC
12
-
3
GGTG
ENSGALT00000075327.2
4138801
4175660
+
Intron
892
chr1
4140044
4140056
ACACC
12
-
2
TGGTG
ENSGALT00000075327.2
4138801
4175660
+
Intron
1243
chr1
4142057
4142069
ATGCCC
12
-
2
ATGGGC
ENSGALT00000075327.2
4138801
4175660
+
Intron
3256
chr1
4142825
4142838
AATCAT
13
-
2
TATGAT
ENSGALT00000075327.2
4138801
4175660
+
Intron
4024
chr1
4142856
4142869
ACAT
13
-
3
TGTA
ENSGALT00000075327.2
4138801
4175660
+
Intron
4055
chr1
4143671
4143684
ACCAGC
13
-
2
CTGGTG
ENSGALT00000075327.2
4138801
4175660
+
Intron
4870
chr1
4144738
4144750
ACACGC
12
+
2
CACACG
ENSGALT00000075327.2
4138801
4175660
+
Intron
5937
chr1
4145425
4145437
A
12
-
12
T
ENSGALT00000075327.2
4138801
4175660
+
Intron
6624
chr1
4145581
4145593
ACAGCC
12
-
2
GTGGCT
ENSGALT00000075327.2
4138801
4175660
+
Intron
6780
chr1
4146189
4146203
AAGAT
14
-
2
CTTAT
ENSGALT00000075327.2
4138801
4175660
+
Intron
7388
chr1
4146204
4146216
AAGAT
12
-
2
CTTAT
ENSGALT00000075327.2
4138801
4175660
+
Intron
7403
chr1
4146520
4146532
ATCCCC
12
-
2
TGGGGA
ENSGALT00000075327.2
4138801
4175660
+
Intron
7719
chr1
4147813
4147828
AAAC
15
-
3
TTTG
ENSGALT00000075327.2
4138801
4175660
+
Intron
9012
chr1
4148227
4148239
AACCC
12
-
2
GGGTT
ENSGALT00000075327.2
4138801
4175660
+
Intron
9426
chr1
4154244
4154260
AAAAAG
16
+
2
AAAAAG
ENSGALT00000083042.2
4150754
4175348
+
Intron
3490
chr1
4154251
4154263
AAAAG
12
+
2
AAAAG
ENSGALT00000083042.2
4150754
4175348
+
Intron
3497
chr1
4154264
4154282
AAAAAG
18
+
3
AAGAAA
ENSGALT00000083042.2
4150754
4175348
+
Intron
3510
chr1
4154278
4154291
AAAGGG
13
+
2
GAAAGG
ENSGALT00000083042.2
4150754
4175348
+
Intron
3524
chr1
4155216
4155229
AT
13
+
6
AT
ENSGALT00000083042.2
4150754
4175348
+
Intron
4462