Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6651 to 6675 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
5056469
5056481
AAAAGG
12
+
2
GAAAAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
21575
chr1
5056752
5056764
AACAAG
12
-
2
GTTCTT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
21858
chr1
5057788
5057801
AAGGTG
13
+
2
TGAAGG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
22894
chr1
5058227
5058239
AGATG
12
-
2
ATCTC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
23333
chr1
5062215
5062227
AT
12
+
6
TA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
27321
chr1
5062489
5062501
AATCAG
12
+
2
ATCAGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
27595
chr1
5062648
5062661
AAGCC
13
-
2
TGGCT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
27754
chr1
5062745
5062757
ACCTAT
12
+
2
CCTATA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
27851
chr1
5063426
5063438
AC
12
-
6
TG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
28532
chr1
5064187
5064201
AATATG
14
-
2
TTCATA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
29293
chr1
5064320
5064332
AACGAT
12
-
2
GTTATC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
29426
chr1
5064540
5064552
AATGGG
12
-
2
TTCCCA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
29646
chr1
5064563
5064576
A
13
-
13
T
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
29669
chr1
5065035
5065064
A
29
+
29
A
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
30141
chr1
5066023
5066035
AATCTG
12
-
2
TTCAGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
31129
chr1
5066336
5066351
AAGG
15
+
3
AAGG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
31442
chr1
5066441
5066453
AACTAC
12
-
2
GTAGTT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
31547
chr1
5067761
5067773
AGAGG
12
+
2
AGAGG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
32867
chr1
5069889
5069908
AAC
19
-
6
TTG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
34995
chr1
5070004
5070018
AG
14
+
7
GA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
35110
chr1
5071679
5071702
A
23
-
23
T
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
36785
chr1
5072329
5072344
AT
15
+
7
AT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
37435
chr1
5072343
5072356
AG
13
+
6
AG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
37449
chr1
5073063
5073075
AAAGCC
12
-
2
GCTTTG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
38169
chr1
5073305
5073317
AAAAG
12
+
2
GAAAA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
38411